Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01611 ATGCCAGAGAGGAGACAGGCTGAAGCAGCTCGCATACGAGAGAAGTATCCTGACAGAATTCCGGTAATTGTTGAAAGGGCAGAGAAGAGTGATGTTCCTGAAATTGATAAGAAAAAGTATCTTGTTCCTGCTGATTTGACTGTTGGGCAGTTTGTGTATGTGGTGAGGAAGAGAATTAAGCTGAGCCCCGAGAAGGCAATCTTCATTTTTGTGAAGAACATCTTACCACCAACTGCGGCAATGATGTCTGCAATATACGAGGAAAACAAGGACGAAGATGGATTCCTATATATGACTTACAGTGGAGAGAACACATTTGGACTTGTGTTCTGA 333 0.4294 MPERRQAEAARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGLVF 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01611 110 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 3 107 IPR004241 -
Vimu5g01611 110 Gene3D - 2 108 - -
Vimu5g01611 110 CDD Ubl_ATG8 3 104 - -
Vimu5g01611 110 FunFam Autophagy-related protein 1 107 - -
Vimu5g01611 110 SUPERFAMILY Ubiquitin-like 3 107 IPR029071 -
Vimu5g01611 110 Pfam Autophagy protein Atg8 ubiquitin like 4 107 IPR004241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01611 Vimu-Chr5 27641062 27642403 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01611 K08341 - gmx:100301895 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01611 5 27641062 27642403 Vimu5g01611 5 27641062 27642403 ECH