Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01609 ATGAAAAACAGGATGCGCGTGACATTTACCGTGGCTACAGTAGCCATCGCAGCTTCTATCATATCCATTTTCTTGGCCGCGCGAAGGCGCAAGAAGCACGACTCCTCTAGTTCGTGCTATTTGCATTCCGAACAGAAACCACAGAGTGCATTCAAGCGCGTATTAGCGGACAATTCTTACACTCAGTTCAAGCATCTCAACAACGACGGTACATTTCACACCCTGCACACTCGTTTCTGTGTTTGGTTGCATATGAGGGAAGGAATACGTGAAAGTTCAAAGAATGCTTCGAATTCGCATCCGTTTGAGGCGGAGATTACAGCATTGTTGAAAACTCCTCCGCCTGAAATTGAATTTGGAACTGTAGACTTAGAAATGAAAGATTCATATGTTTGGGTTCACACCGAGACGCAATTAAAGGAATTAGTTGATGCGTTGAGTGAAGAGAGGTTTTTTGCTGTGGATACAGAGCAACATAGCTTACGATCTTTTCAAGGCTTTACAGCATTAGTTCAGATTTCTACAGTGGAGAAAGATTATTTGGTTGACACAATAGCCCTGCATGATTTTATGGGCATTCTTCGCCCTGTTTTCGCCAATCCTTCAATTTGTAAAGTGTTCCATGGGGCTGACAATGATATAGTCTGGTTACAGAGGGACTTCCACATATACGTTGTTAACCTCTTTGATACTTCAAAGGCATGTGAGCTGCTGTCAAAACCACAGAAATCACTTGCTTATTTGCTTGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAGCGCGAAGATTGGAGACAACGCCCTCTCTCAGCAGAAATGGTACATTATGCCCGAACAGATGCACATTTTCTGTTGTATATTGCTAATTGTCTGATCAATGAACTCAAACAACTGGACAACGAAAACTCTAGTTCCAGTGACAAATTCCATTTTGTTCTTGAGGCTAGTCGGCGTTCAAACATGATATGTTTACAACTTTTCACAAAGGAGATTGAAGCATATCCTGGGGAATCTTCTGCATTATCATTATTTTCGCGTCAAGTGTGCAGTCATGGTTCTACGTCTATATCAAATGAAACCCAGAATATTGTGAGGCAACTATGCGCATGGAGAGATCTGATGGCTCGTATTCATGATGAGAGCTTAAAATATGTACTCTCAGACCAGGCAATTGTTGCTTTGGCAAGTCAGCCTTCAGCTAGTCACTCTGAAATACACAAGATCATAGCCCAGGCTGACATCAATATGGAAACGGGTGTGAACTCTTTCATCATTTCCTCATCTCCTGTTGTTTGCAGTCACCTCAGTGATATTTATCATATGCTTGCAAACAAGTTGGTTAATGATGATGATGATATTTATTCAGTGATTCTTCAGAAGTGTATAGGTCAAAATGGGAGTTGTCCGCTTTCAATATTTAATTATGCTTTGTTGATAAACAGTAATCTAAGACCTAATTTAGCCCATAAACAACTGGGCCCAAAGAGTTCTAAACAATATTCTCGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAGTTCTCTTGTAAATCTCCTGTTTATCACAATTGCCGGATATTTGCTAATGATGGGAGGCTACTTTGTTATTGTGACGAGAAGAAGCTTAAATGGTATCTTAGTCGGGATCTTGCAAAACTTGTTGACGAGGATCCCCCAGCTATAATGCTTCTTTTTGAACCCAAAGGCCGCCCAGAAGACGAAGACAATGACTTCTATATCCAGAGCAAGAAAAATATATGTGTTGGATGTGGTGAAGGAAATCACTATTTACGATATCGAATCATTCCATCTTGTTACAGAATACATTTCCCTGAGCATTTGAAAAGCCATCGTTCTCATGATATTGTCCTACTTTGTGTGGATTGCCATGAGGTCGCACATGCCGCAGCAGAAAAGTACAAGAGAAAAATAGCTGCTGAATTTGGGATTCCTCTCTACCTTCGGAGGGTAGTTCATCCAGGTCAAAAGACTGAAAAACAAATTGAAGAGAGTGGTGTATCTCCTTTACAGTTACGAACAGCTGCTATGGCTCTTTTACGCCATGGACCAAGAATGCCTCTCAATCGCAGAGAAGAACTGACTGAGATTATTAAGAGATATTATGGAGGAAGGGACATATCTGACGAAGATCTAGAAAGAGCTTTGCAAGTTGGCATGACGCCTCATGAAAGAAGACGATTTGAGAAGAAGAGAGGGTTTTCTTTTAAACATTCTACAGGGAGTACTGCCACAGTGCCAGAACAGAATAATCATATTGGTTGCTCACCCAGAATGAGTAATGTGGATGACTTAAAAACTGATGCTCATGATGGCTCATATGCAAATGAAGTAGATACGGAGCTCTTTATGAGAAAAGATGATTTTAGAAACTCCACTTCAGCTTCTGATGTTACAGTTAACGGACTTGACTCTGCAGCTTTGAATGAAGATGAGATTACAGTTGCAACTGCAGATTGCAATGAAGGCGGTGACTCTGCTGCTGTAAATGTTGATAACAGCTATCTGAACAGAAGACAAACAAATGGACTTGGTGACTTGTCTTGTTCTCCCAGTGATGAAAAATCTATACATACCGAACATAATTCAAAACTCTCTCTCTTGGGACATGGACCTCATGGGAAACAAGTTGTAGAACATTTACTGAGGGAGTATGGTGAAGATGGCATTCGAGAGTTTTGTCAGAGATGGAGACAAGTATTTGTGGACGCTGTAAAACCACGTTTTCTTCCTGGTGGTTGGGATGTAAAACACAGTACACTTGTAATATTGATATGTATAGAAACTGAGTTTATCATTCCTTTCCTCGAGGCTTTGATTTTGGACACTATTTTTGCCAGTGGAAGAAGGGACTTCGGGGAGTTCAGTGTGTACAAACCTGACAAGAGAGCAGCTTCAGCGACTGCAGAGTAA 2934 0.408 MKNRMRVTFTVATVAIAASIISIFLAARRRKKHDSSSSCYLHSEQKPQSAFKRVLADNSYTQFKHLNNDGTFHTLHTRFCVWLHMREGIRESSKNASNSHPFEAEITALLKTPPPEIEFGTVDLEMKDSYVWVHTETQLKELVDALSEERFFAVDTEQHSLRSFQGFTALVQISTVEKDYLVDTIALHDFMGILRPVFANPSICKVFHGADNDIVWLQRDFHIYVVNLFDTSKACELLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYARTDAHFLLYIANCLINELKQLDNENSSSSDKFHFVLEASRRSNMICLQLFTKEIEAYPGESSALSLFSRQVCSHGSTSISNETQNIVRQLCAWRDLMARIHDESLKYVLSDQAIVALASQPSASHSEIHKIIAQADINMETGVNSFIISSSPVVCSHLSDIYHMLANKLVNDDDDIYSVILQKCIGQNGSCPLSIFNYALLINSNLRPNLAHKQLGPKSSKQYSRKASRDLFVQKFSCKSPVYHNCRIFANDGRLLCYCDEKKLKWYLSRDLAKLVDEDPPAIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIAAEFGIPLYLRRVVHPGQKTEKQIEESGVSPLQLRTAAMALLRHGPRMPLNRREELTEIIKRYYGGRDISDEDLERALQVGMTPHERRRFEKKRGFSFKHSTGSTATVPEQNNHIGCSPRMSNVDDLKTDAHDGSYANEVDTELFMRKDDFRNSTSASDVTVNGLDSAALNEDEITVATADCNEGGDSAAVNVDNSYLNRRQTNGLGDLSCSPSDEKSIHTEHNSKLSLLGHGPHGKQVVEHLLREYGEDGIREFCQRWRQVFVDAVKPRFLPGGWDVKHSTLVILICIETEFIIPFLEALILDTIFASGRRDFGEFSVYKPDKRAASATAE 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01609 977 SMART 35exoneu6 130 298 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vimu5g01609 977 Coils Coil 290 310 - -
Vimu5g01609 977 SUPERFAMILY HRDC-like 356 411 IPR010997 GO:0000166|GO:0044237
Vimu5g01609 977 SUPERFAMILY Ribonuclease H-like 46 300 IPR012337 -
Vimu5g01609 977 ProSiteProfiles HRDC domain profile. 359 439 IPR002121 GO:0003676
Vimu5g01609 977 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 38 969 IPR045092 GO:0000175|GO:0000467
Vimu5g01609 977 Pfam 3'-5' exonuclease 130 297 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vimu5g01609 977 Gene3D - 45 335 IPR036397 GO:0003676
Vimu5g01609 977 MobiDBLite consensus disorder prediction 744 764 - -
Vimu5g01609 977 Gene3D HRDC domain 350 454 IPR044876 -
Vimu5g01609 977 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 45 335 - -
Vimu5g01609 977 Pfam HRDC domain 364 410 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01609 Vimu-Chr5 27582626 27589656 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01609 K12951 - gmx:100791485 1498.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01609 5 27582626 27589656 Vimu5g01609 5 27582626 27589656 ECH