Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01592 ATGCCCCAGTTTGTCACCAAACTCAACAACTCAACAACCATAAGGCGACGCTTTCACCACCGCGTTTCCCTGCTACGCCGCTGCATCCTCCGTGTCCTCCACCGCATCCTGCTCTGTTCCGGGAGGAAGACCAACAACACCTACAGCATGCTGCCTCCAGCATTACCCTCTCCGCCGCTGCCCACCACGGCAGAATCAGCCGGCGAAATTGCTCGTGAAGAGATGGATGTCGCGCCGCCGGCGATGTTTCAAACCCATGATTTGGATTCTGATTTGGTCTCCTTGAAGATCAGCTTGTTGGGAGATTGCCAAATTGGAAAAACCAGCTTTTTGGTGAAATATGTTGGGGATGAAAAGGAGAAGCATGGTAGCCAGATGGAAGGGTTAAATCAGATGGACAAAACACTGGTCGTTAAAGGGGTTCGCATCTCGTACTGTATCTGGGAAGTACAAGGTGATGGAAAAACAGAAGATCGAATACCGATGGCTTGCACGGATTCTGTGGCGATTTTGATTATGTTTGATCTAACAAGTCGATGCACATTAAACAGTGTTCTCGGATGGTACAAAGAAGCCAGGAAATGGAATCAGACAGCAATACCAGTTTTGATAGGAACCAAGTTTGATGATTTTATCCAGCTCCCTATTGACATCCAATGGACCATTGCTAATGAGGCAAGAAAATATGCAAAGGCCCTGAATGCTGCCTTGTTCTTTTCCAGTGCAACTTACAACATCAACGTGAATAAGATCTTCAAGTTCATCACTGCTAAACTTTTCGACCTACCATGGAAAGTGGAAAGAAATTTGAATGTTGGGGAGCCCATCATTGACTTCTAA 840 0.4643 MPQFVTKLNNSTTIRRRFHHRVSLLRRCILRVLHRILLCSGRKTNNTYSMLPPALPSPPLPTTAESAGEIAREEMDVAPPAMFQTHDLDSDLVSLKISLLGDCQIGKTSFLVKYVGDEKEKHGSQMEGLNQMDKTLVVKGVRISYCIWEVQGDGKTEDRIPMACTDSVAILIMFDLTSRCTLNSVLGWYKEARKWNQTAIPVLIGTKFDDFIQLPIDIQWTIANEARKYAKALNAALFFSSATYNINVNKIFKFITAKLFDLPWKVERNLNVGEPIIDF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01592 279 Gene3D - 86 271 IPR027417 -
Vimu5g01592 279 FunFam Septum-promoting GTP-binding protein 1 85 269 - -
Vimu5g01592 279 Pfam Ras family 96 259 IPR001806 GO:0003924|GO:0005525
Vimu5g01592 279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 272 IPR027417 -
Vimu5g01592 279 PIRSF GTPase_Tem1 3 279 IPR017231 -
Vimu5g01592 279 PANTHER - 92 266 - -
Vimu5g01592 279 ProSiteProfiles small GTPase Rab1 family profile. 89 279 - -
Vimu5g01592 279 PRINTS Transforming protein P21 ras signature 237 259 - -
Vimu5g01592 279 PRINTS Transforming protein P21 ras signature 197 210 - -
Vimu5g01592 279 PRINTS Transforming protein P21 ras signature 95 116 - -
Vimu5g01592 279 PRINTS Transforming protein P21 ras signature 136 158 - -
Vimu5g01592 279 SMART rho_sub_3 97 261 IPR001806 GO:0003924|GO:0005525
Vimu5g01592 279 SMART rab_sub_5 95 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01592 Vimu-Chr5 27423964 27425858 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01592 K07976 - gmx:100780638 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01592 5 27423964 27425858 Vimu5g01592 5 27423964 27425858 ECH