Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01544 ATGGAAACAAGATCTGCAAAACGCAGGAAAATGGCTCAGATGATAGCGAACGATGCCAAAGTAACCACGGATCGGATCAGTGATCTCCCTGATGCAGTTCTTCATCAAATCCTTTTCCTTCTTCCCATAAAATGTGTTGCACAAATGAGCATTCTTTCCAAAAGATGGAGACATTTATGGTGTACTTTTCCTGACCTTGATTTCAGAACCCTTGACCCATTTCAAATCTCTTCCAAATATCTTAAATTTTTGGAGTTTGAAAATCCAAGGCAACCTTTGGATTCGTCGCGAATGGATTTCATCACACAAGTTTTCTCCATTCGTGACAAACACTCCGACATTAGGGTTCTTTGTTTTCGTGCACGTTTGAGTTTTTCACGGTTAAATGGTTTGATTCGTAGGGCTATTAGGCATAACGTTAAAGAGCTTGATATCGAAGCATCATCAGTGTGTACAGACGATTACTTCAACTTTCCTAGATGTGTTATTGGGAGTGAATCTCTAAGGGTTTTGAAAATAAGATCAGGTTTTCGTCTGCCTCCATCATCAGTTATGAGGCATGGCTTTCAATCTCTTAAAACCTTGTCTCTTTCCCTTGTTATTTTGAACAACCAACCTTCTCTCACTGATTTGTTCTCTGAATCATCCTTTCCTCTTCTTCAAACTCTCCACCTTGATGCATGTTCTGGGTTGAAATATCTTCGTGTTGGATGTAGGGCTCTTGTAGATTTGAACTTAGAGAAGTGTTATGACCTAGAGGGTTTGGATATCTCATGTGCAAAACTTGAGAGAATGAGATTGGTGAAATGTTTTGTAGCGGATAGTGAGAAGAGTTGGGTAAAGATCAATACACCAATGCTTGAACATTTGTGTTGGCAGCATAATGCAGTCACTGACATGACTATGTTTGAGCCTTGGAATTTGTTGCATGAGGTCACTGTTGGTTTCTCTATATTGACAAGAGATAATAGTCAGAGTAAGCTTCAAAGTGCTGTTGAATTATTATCTGGACTGTCTCGTGTGCATTCCTTGTCTCTTGAAAGCCAAACTATTGAGATTCTGTCAAATAATCGCCTCCTCTTTCAGCCATTTTATGATCTTAAACATTTAGAACTGCAAACTGGTTTCAACAAAAGTAATGTTCAGGGATTGACATGTCTATTCAGGAGCTCTCCCACTCTTAACACTTTGATTCTCAAGATCATCCATGAAAATAGGATTGAAAGAAAAGAATGGAATAGAGACTTGTGGGACATGACTATCACTGAGGGAGAGCAGTATTGGGAGTCTCAGATCAGAACTCTGGAGTCTTTTCTGCAACACTTGAAAGTGGTAAAAATTCATGGATTTCTTGATTATGAGAATGAAGTTGCACTTGCAAAGTTTCTCCTTAAGCATGGAAAATCCTTGGAAGAAATGGTGTTACACACAGGACATTGCAATGCAAGAGACACTCTTAGGCGACAAAAGATAAGGTCACAAATGGTGGGATTTTCTTGGGCTTCTTCTAATGCAAAAGTGGCATTTCAGTAG 1533 0.392 METRSAKRRKMAQMIANDAKVTTDRISDLPDAVLHQILFLLPIKCVAQMSILSKRWRHLWCTFPDLDFRTLDPFQISSKYLKFLEFENPRQPLDSSRMDFITQVFSIRDKHSDIRVLCFRARLSFSRLNGLIRRAIRHNVKELDIEASSVCTDDYFNFPRCVIGSESLRVLKIRSGFRLPPSSVMRHGFQSLKTLSLSLVILNNQPSLTDLFSESSFPLLQTLHLDACSGLKYLRVGCRALVDLNLEKCYDLEGLDISCAKLERMRLVKCFVADSEKSWVKINTPMLEHLCWQHNAVTDMTMFEPWNLLHEVTVGFSILTRDNSQSKLQSAVELLSGLSRVHSLSLESQTIEILSNNRLLFQPFYDLKHLELQTGFNKSNVQGLTCLFRSSPTLNTLILKIIHENRIERKEWNRDLWDMTITEGEQYWESQIRTLESFLQHLKVVKIHGFLDYENEVALAKFLLKHGKSLEEMVLHTGHCNARDTLRRQKIRSQMVGFSWASSNAKVAFQ 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01544 510 ProSiteProfiles F-box domain profile. 23 71 IPR001810 GO:0005515
Vimu5g01544 510 Pfam F-box domain 26 62 IPR001810 GO:0005515
Vimu5g01544 510 Gene3D - 22 72 - -
Vimu5g01544 510 SUPERFAMILY F-box domain 23 91 IPR036047 GO:0005515
Vimu5g01544 510 SUPERFAMILY RNI-like 123 417 - -
Vimu5g01544 510 Pfam FBD 436 475 IPR006566 -
Vimu5g01544 510 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 24 484 - -
Vimu5g01544 510 SMART 9598neu4hmm 436 510 IPR006566 -
Vimu5g01544 510 CDD F-box_AtFBL13-like 26 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01544 Vimu-Chr5 26862287 26865146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01544 21 459 EF-hand Containing Proteins AT5G41840 24.486 5.58e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01544 - - gmx:100819136 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01544 5 26862287 26865146 Vimu5g01544 5 26862287 26865146 ECH