Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01542 ATGGCTGGAATTGGCTTTGAGGACCTGCTACCTGTCATGGCCGACAAGCTTGGTGGGGAGGGGCTTATGAAGGAGCTCTGCAACGGGTTTGAGCTGCTGGTGGACAAAGAAAAAGGGGTGATAACGTTGGAGAGTTTGAGGGAGAAAGCTGCACTCTTGGGGCTGCAGGACTTGAAGGAGGATGAACTTGTGAGCATGATGACTGAAGGCGATCTTGATGGAGATGGGGCACTCAACCAGATGGAGTTTTGCGTTTTGATGTTCAGGTTGAGCCCTGAGTTGATGGAGGAATCCTGGTTTTGGCTTGAAGACGCTCTCCAACATGAACAACTCAACCAACACCACAACAACACCGATAGCAACTCTTCCATTTAA 375 0.4987 MAGIGFEDLLPVMADKLGGEGLMKELCNGFELLVDKEKGVITLESLREKAALLGLQDLKEDELVSMMTEGDLDGDGALNQMEFCVLMFRLSPELMEESWFWLEDALQHEQLNQHHNNTDSNSSI 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01542 124 Gene3D - 4 119 - -
Vimu5g01542 124 ProSiteProfiles EF-hand calcium-binding domain profile. 58 93 IPR002048 GO:0005509
Vimu5g01542 124 ProSitePatterns EF-hand calcium-binding domain. 71 83 IPR018247 -
Vimu5g01542 124 PANTHER CALCIUM-BINDING PROTEIN KIC 5 111 IPR044205 GO:0005509
Vimu5g01542 124 Pfam EF-hand domain pair 37 89 IPR002048 GO:0005509
Vimu5g01542 124 SUPERFAMILY EF-hand 23 103 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01542 Vimu-Chr5 26835282 26837409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01542 6 109 EF-hand Containing Proteins AT5G54490 62.857 3.24e-42 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01542 K24345 - gmx:100527206 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01542 5 26835282 26837409 Vimu5g01542 5 26835282 26837409 ECH