Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01536 ATGCTTAACGGCTGTAGCGTGCTCGTCGACGGCAGCCAGATTACTGATAGGCGGTCAGGGGAAACGGAGGAAGAAGAATCTCTTTCTCTATACAACAGTGCCCCTTCCTTCATTCTTTCAAAGAGGTTTCCTGTCTCTCTCTCTCTCCATCCTCTATATGACTGCATCTCTTATGCATATCTGTCTCTGGATTCTGCCGGTTGGAAAGGAATTTATTTCACTCTGGCCGCTATAACAGAGTCAAATTATTCTCGCACCTCTAGGAGGGTGTGGGGTGACGAAGAGGGAGTGATTTGGCTTTGTGTTTTGCGAAGATCAAAGTCTTCGGATATATGGAGATTGTGCCGTGTTTCAAGAAAGTTGTGTTTAGATGTAGCTGTGAACGTCATTGCAGCAATGTTTAGATTTTCTTGTTTCCATGCTAATGTACACAGCAATAAAACAAAGAAAACAGTTCAACCTTCTACTGAAGTAATGTTGAAGACTTATGAAGATGTTGCCCAAAATCAACGCCGTAAAGATTCATCTAATCCTCCAAGCGCACATTCACCCCTTCTGAAAGAACAAGCAGACCAGCAAATAGATGTGACTGGGATTCATATTAGCAATTGGGATTCAGTTGAGCGCAGTTGTAGGTCAGAGGATATGAGTAGCAAGGTTTCCTTTGAAAATGACAGTCAAGTTAACCAATCTAGGCCTCTTATAAAGAAGAGTCAGTCTCTTCAAAGTGTGCTTGATCAAGGCATAAGGGATGGTGATGAAGATATGGGGCTGTCGTGTGGTGATGCCAAAAGCCCAATTGAGTCAAAGATGTCAACTTCCAAAAAGTATCATAATGGAAACCCTGTTGATCAGTATGAAAGCAATCCAAACGTTGAGTTTGCTGCCAGTTCAGGTTTTGCAAATGATGCCTCGCTTTTTTCAATTGGAGACCCAACACCTTCAGATAAAGACGCTCGTGAAATTTCTGACACTCCTTTATCTGGTGAATATGTTGGTGACATTCCTGACCAAACTTCTGTTCCTGGTAGTGTATCCCTACGGAAGTCACATTCTTCACCCAATATCAGAGCTTCTATACTTTCTGCTGAAAAAGATGCTTTTAGACGTGCATTCTCAAGATCCTGTGATGATCTTCATGCTTTAAGCATGAGGCACAAAGAGGAATTCATCAACGACTTTAATGATCAAATAAGGGGAGATCAAGAAAGAGAGAATGACATGGGAAAAACTGAAGATGGTCATATGGACAACCTCTTTGATGATGGTTTCGATTCTTATCTGCTTACTGGTTCAGCAAAAGACTGGGTAATGCCATTGACATATGATACAAGTGATTCCAAAACCCTTCAAGGAGATTCCTCAGTTGAATTTCCTAACAAGGATTTCAAGATTAAGCGCATTGAAGATTGGGTTATTGGTCTGCAGCATTGTGGACCACCCGTAGAGGAAACAAATGAAGAATTGCCTGAAGTTGTTAAGCCTTTAGCTGATGTTAACACAGTAAATGGTGTAACTGCTGCCATTGTAGATCATAAGGCCACTCCAGGAATGGATGCAGCTAAAAGATATATATCTTCTCTGGGGCCTAATGCCACTACCGCTCAGCTGGCTAATCATGGGTTGGTTGTGATCCCCTTTTTGAGTGCATTCGTGAGTTTGAAAGTGCTCAATCTGTCTGGAAATGCTATCGTGAGGATAACTGCTGGCGCTCTTCCCCGTGGACTTCACGCACTGAATTTGTCTAGAAACAAGATCTCCACTATCGAAGGATTACGCGAACTTACGAGGCTTCGTGTCCTAGACCTCAGTTACAACCGTATATTAAGAATTGGACATGGCCTTGCATCCTGCTCATCTCTGAAAGAGTTGTACCTCGCTGGAAACAAGATCAGCGAAGTGGAGGGTCTGCACCGTCTCTTAAAATTAAGCATCCTGGATCTCCGTTTTAACAAGATTTCAACAGCCAAATGTCTGGGCCAACTTGCAGCCAACTATAACTCTTTGCAAGCTATCAACTTGGATGGGAACCCTGCCCAGAAAAATGTTGGAGATGAACAGATGAAGAAATATCTGCAGGGCCTTCTACCCCATCTCGTCTACTACAATCGGCAGCCTATAAAAGTGAGCACTTTGAAGGATGGAGCAGAACGGTCGGTTCGGCTTGGAATGAATTCCCATCAGTTTGATCGCAACCTTAGGTCGGATCGCAAGACCACAAGGAAGAGCAGCCAAGGTGGTGTTGGCTCACGGAGGTCAGTGGCCACTTCCACTCATGTTCGCAGAAATACGGATTCACCAAAAGTATCCAGAGGCAAGCAAGCTCACCTGCCACCATCTAGAACCAAAGTACCAACCCACACTCGCCATCAGTTTGAAGCTCCCACCAAAGTATTGAACGTGACCCCAAATCTCTCCATGCGCAAGAGTCGCAGCGAGGGAAATTTTGGAGCTCTTTGA 2460 0.4394 MLNGCSVLVDGSQITDRRSGETEEEESLSLYNSAPSFILSKRFPVSLSLHPLYDCISYAYLSLDSAGWKGIYFTLAAITESNYSRTSRRVWGDEEGVIWLCVLRRSKSSDIWRLCRVSRKLCLDVAVNVIAAMFRFSCFHANVHSNKTKKTVQPSTEVMLKTYEDVAQNQRRKDSSNPPSAHSPLLKEQADQQIDVTGIHISNWDSVERSCRSEDMSSKVSFENDSQVNQSRPLIKKSQSLQSVLDQGIRDGDEDMGLSCGDAKSPIESKMSTSKKYHNGNPVDQYESNPNVEFAASSGFANDASLFSIGDPTPSDKDAREISDTPLSGEYVGDIPDQTSVPGSVSLRKSHSSPNIRASILSAEKDAFRRAFSRSCDDLHALSMRHKEEFINDFNDQIRGDQERENDMGKTEDGHMDNLFDDGFDSYLLTGSAKDWVMPLTYDTSDSKTLQGDSSVEFPNKDFKIKRIEDWVIGLQHCGPPVEETNEELPEVVKPLADVNTVNGVTAAIVDHKATPGMDAAKRYISSLGPNATTAQLANHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHALNLSRNKISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLSILDLRFNKISTAKCLGQLAANYNSLQAINLDGNPAQKNVGDEQMKKYLQGLLPHLVYYNRQPIKVSTLKDGAERSVRLGMNSHQFDRNLRSDRKTTRKSSQGGVGSRRSVATSTHVRRNTDSPKVSRGKQAHLPPSRTKVPTHTRHQFEAPTKVLNVTPNLSMRKSRSEGNFGAL 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01536 819 Pfam Leucine rich repeat 553 608 IPR001611 GO:0005515
Vimu5g01536 819 ProSiteProfiles Leucine-rich repeat profile. 620 641 IPR001611 GO:0005515
Vimu5g01536 819 Gene3D Ribonuclease Inhibitor 506 691 IPR032675 -
Vimu5g01536 819 MobiDBLite consensus disorder prediction 266 285 - -
Vimu5g01536 819 MobiDBLite consensus disorder prediction 306 351 - -
Vimu5g01536 819 MobiDBLite consensus disorder prediction 793 811 - -
Vimu5g01536 819 SUPERFAMILY Outer arm dynein light chain 1 540 708 - -
Vimu5g01536 819 MobiDBLite consensus disorder prediction 742 763 - -
Vimu5g01536 819 PANTHER NISCHARIN RELATED 361 794 - -
Vimu5g01536 819 MobiDBLite consensus disorder prediction 722 819 - -
Vimu5g01536 819 MobiDBLite consensus disorder prediction 264 285 - -
Vimu5g01536 819 SMART LRR_sd22_2 573 594 - -
Vimu5g01536 819 SMART LRR_sd22_2 640 664 - -
Vimu5g01536 819 SMART LRR_sd22_2 618 639 - -
Vimu5g01536 819 SMART LRR_sd22_2 595 617 - -
Vimu5g01536 819 MobiDBLite consensus disorder prediction 220 241 - -
Vimu5g01536 819 MobiDBLite consensus disorder prediction 172 186 - -
Vimu5g01536 819 ProSiteProfiles Leucine-rich repeat profile. 597 619 IPR001611 GO:0005515
Vimu5g01536 819 SMART LRR_typ_2 551 574 IPR003591 -
Vimu5g01536 819 SMART LRR_typ_2 595 618 IPR003591 -
Vimu5g01536 819 SMART LRR_typ_2 640 662 IPR003591 -
Vimu5g01536 819 FunFam Protein phosphatase 1 regulatory subunit pprA 512 693 - -
Vimu5g01536 819 MobiDBLite consensus disorder prediction 215 241 - -
Vimu5g01536 819 MobiDBLite consensus disorder prediction 167 186 - -
Vimu5g01536 819 ProSiteProfiles Leucine-rich repeat profile. 575 596 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01536 Vimu-Chr5 26744547 26755533 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01536 - - gmx:100790061 1064.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01536 5 26744547 26755533 Vimu5g01536 5 26744547 26755533 ECH