Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01510 ATGCGTGTCCTTCTTGATGTTGGATTAGTGTTGCAAATGGATCCAAGCAATTTTACTTCATTCAATGCATCCCTATACTTCCATTGTTCTTCTTGGGCAATTGAGCTAGTGGCTCTAATAGTGCCTTGCCTCAAAATGTCATCTGGGATACTCACAGACCCAGGGAGTAGTCAACTGAATCTCACGTATGTGTTTTCTATTTCACTGAGTTTGCATGCCCTTTGGAATTGCAGTGGTGGTGGTGTGGTTGCATACTCAGAATCACAAACAGGAGCTGAACGTCCTAGTATTCAAGCTAATGAACCCTCCAAAAAGAAAGTGGTGGTTCTTGGAACAGGATGGGCTGCCACCAGTTTCCTTAAGGATCTGGATGCATCATTATATGATATTCAGGTTGTTTCGCCTCGTAATTACTTTGCATTTACTCCCTTATTACCTAGTGTCACTTGTGGGACAGTTGAAGCACGGAGCATTGTAGAGCCAGTCAGAAACATCATTAAAAAGAGAAAAGGAGAAATAAACTTCTGGGAAGCAGAATGCATCAAGATTGATTCTTCAAACAAAAAGGTTTTCTGTCGGTCCAATATTGAACACTTGGTGGGAAGTGGCGAATTTTCCTTGGACTATGATTTCTTGGTTGTAGCAGTGGGAGCACAAGTAAATACATTTAACACTCCTGGTGTCAAGGAGAACTGTCATTTTCTGAAGGATGTTGAGGATGCTCAGAGGATTAGACTGTCTGTGATTGATTGCTTTGAGAAGGCCGTTCTTCCTAGTATAACTGACCAAGAGCAAAGGTCAATTCTTCATTTTGTTGTAGTGGGAGGAGGTCCAACTGGTGTGGAATTTGCTGCAGAATTGCATGATTATGTCCTAGAAGATTTAATCAAATTATATCCAACTGTCAAAGATAAAGTGAAAATAACAGTGATTCAATCAGGAGATCACATCTTGAACATGTTTGATGAAAGAATAAGTTCATTTGCTGAGCAAAAATTTAATAGAGATGGGATAGAAGTTCAAACAGGATGCCGGGTCATCGGCGTTGATGACAAGGTTATTACAATGAAGGAAAAATCAACTGGAGAGGTTTGCTCAGTGCCCCATGGATTGGTTGTCTGGTCAACTGGCATTTCAACTCTTCCAGTTATAAGGGACTTTATGAAAGAAATTGGTCAGGCTGAAAGGCATGTACTAGCAACAAATGAATGGTTGCGTGTGAAGGGATGTGAAGAGGTGTATGCCCTTGGTGATTGTTCTAGCATAACTCAACGTAAAATCATGGATGATATCACAGCCATATTTGAGGCTGCAGACAAAAATAAGTCAGGAACCTTAAGTATTGAAGAATTCCAGGAGGTGGTGGATGACATTGTCTTAAGATATCCGCAAGTTGAGCACTATCTAAAGCAAAAACATCTGCGTGATTTTAGCACACTATGGAAAGATTTGCAAGGGAATGAAAGCAAGGAAATAGGCATAGAAGCATTTAAGCTGGCCCTTTCTCATGCAGATTCACAGGTGAAGAGTCTGCCAGCAACTGCACAGGTTGCTGCCCAACAGGGTGCATATCTAGCTAGATGCTTCAACCACATGGATCATGCTGAAGAGCATCCTGAAGGTCCTCGACGATTTAGTGGATACGGACGCCATAAGTTTCTGCCCTTCCGTCGCACACAGGAAGCGAGGGGATTAGATGTCGAATTAGGAAAAGTGTTCTCTATGGTCTACTCCACGCCATTATGTTGCAAGAGCACGAATCAAGAACAGGTCACCTCTAGAAACCATGAGCTAGACCATGAAAATGTGGAAGGGAGAATGGACAAACCAGAAGAACAAGAACACAAATCGAGAACAGCTGCAGAACTTCCTGGAGACTGGGTTTCCATGGGTCACAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGTGGAGGAGGAGCAGTGGCATTTTGCGATTCCAAACCAGAACATAGCAATGAACCTCCAAAGAAGAAGGTGGTGGTGCTTGGAACTGGTTGGGCTGGAACCAGTTTTCTGAAAAATATGAAAAGCAACTCCTATGATATTCATGTGGTTTCACCACGTAACTATTTTGCATTCACGCCATTGCTACCAAGTGTAACATGTGGCTCAGTGGAAGCAAGGAGCGTCGTTGAACCCATTCGCAGTATCACCCGCAGGAGTGGTGTAAACATTAGTTTTAGTGAAGCTGAATGCTACAAGATCGATCAAAAGAATAACAAAGTTTTTTGTCGTGCTGTGAAAGACAAAAAGTCTGGTGAACGAGAAGAATTCTCCATTGATTATGATTACCTGGTAATAGCTATGGGAGGTCGTTCTAATACCTTCAACACACCTGGTGTTGAGGAACACGCCCATTTCCTGAAGGAAGTGGATGAAGCTCTAAAAATCCGTCGGAAAGTGGTTGAACTTTTTGAAAGAGCTAGCCTCCCTACTTTACCAGAGGAAGAGAAGAAAAAGCTTCTGAGTTTTGTAGTCGTTGGTGGTGGTCCAACTGGGGTAGAATTTTCTGCTGAACTTCATGACTTTGTACATGAGGATCTGGCTTATTTATATCCTGAACTTGAAAAGTATGCGAAGATTACTCTCTTGGAGGCAGGCGATCATATCTTAAACATGTTTGACAAGAGAATTACTGAATTTGCTGAACAAAAGTTTGCCAGAGATGGCATTAATGTGAAGTTGGGATCTATGGTTGTGAAAGTTGGTGAAAACGAAATCACTTCCAAAGAAAGGTCAACTGGTGAAATTGTTACCATACCTCACGGAATGGTAGTTTGGTCAACTGGTATTGGTGCTCGCCCTGAAATAGTTGAATTTATGAAACAGCTTGGCCAGATTAACAGACGTGCATTGGTCACTGATGAATGGCTAAGGGTGGAAGGATCTGACAACATCTATGCTCTTGGTGATTGTGCCACTGTAAATCAACGTAGAGTTATGGAGGATATAGCGGTGATATTTAGCAAGGCTGACAAGAACAATTCCGGAAAATTAGATCTTAAAGAATTTAAAGACGTTGTTGATGACATTATTGAAAGGTACCCTCAAGTGGAAATTTATTTAAAGAAGAACCAAATGAAAGACATGGCCAGCTTGCTAAAGAAATCCCAAGAAAGCGGCATTTCAGTGGACATTGAATACTTCAAAGAAGCCCTTTCCAAAGTAGACTCTCAGATGAAAAATCTTCCTGCCACAGCTCAGGTAGCTGCACAGCAAGGAGTGTATCTTGCAGACTGTTTCAACCGCATGGAGGATTGTGAGAGGTATCCTGAAGGCCCTCTCAGGTTCAGAGGAGTTGGTCGCCATCGATTCCGTCCCTTCAGCTCAGCTTCCAGGAGATTGGATTTCAATTGGTCAGAGCACCCAGTGGCTCTGGTATTCAGTGTATACAAGCAAACAAGTGAGCTGGAGAACAAGGTTTTTGGTGGTTGGGGACTGGGGAAGACGATTCTTGTTTGGATACTATCCCTGACTCCAGCAACTGAAATACATGACTATTCTGAGAGACTCATCTGCTTGAACTGGTCGATCGCTCTGGTCTCCGAACAGGCTCTGCCGGAGAATAAGCTTCTGCAACTCCTGGTGGTGGGTTCTTCCATTGCCGTGGGCACAGTGGTAGACATCCAGATGCGTAGGAAGAAACTACTAATCGTGTGTGTCTTTATAGAGGAAACAGGGGGCAGAGGGGTAAAACATGTGAGTAAGGTGGTTTTGGGTGATGGAATACTGTACAGCTAA 3765 0.4284 MRVLLDVGLVLQMDPSNFTSFNASLYFHCSSWAIELVALIVPCLKMSSGILTDPGSSQLNLTYVFSISLSLHALWNCSGGGVVAYSESQTGAERPSIQANEPSKKKVVVLGTGWAATSFLKDLDASLYDIQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEINFWEAECIKIDSSNKKVFCRSNIEHLVGSGEFSLDYDFLVVAVGAQVNTFNTPGVKENCHFLKDVEDAQRIRLSVIDCFEKAVLPSITDQEQRSILHFVVVGGGPTGVEFAAELHDYVLEDLIKLYPTVKDKVKITVIQSGDHILNMFDERISSFAEQKFNRDGIEVQTGCRVIGVDDKVITMKEKSTGEVCSVPHGLVVWSTGISTLPVIRDFMKEIGQAERHVLATNEWLRVKGCEEVYALGDCSSITQRKIMDDITAIFEAADKNKSGTLSIEEFQEVVDDIVLRYPQVEHYLKQKHLRDFSTLWKDLQGNESKEIGIEAFKLALSHADSQVKSLPATAQVAAQQGAYLARCFNHMDHAEEHPEGPRRFSGYGRHKFLPFRRTQEARGLDVELGKVFSMVYSTPLCCKSTNQEQVTSRNHELDHENVEGRMDKPEEQEHKSRTAAELPGDWVSMGHSTQWLWYSVYASGGGAVAFCDSKPEHSNEPPKKKVVVLGTGWAGTSFLKNMKSNSYDIHVVSPRNYFAFTPLLPSVTCGSVEARSVVEPIRSITRRSGVNISFSEAECYKIDQKNNKVFCRAVKDKKSGEREEFSIDYDYLVIAMGGRSNTFNTPGVEEHAHFLKEVDEALKIRRKVVELFERASLPTLPEEEKKKLLSFVVVGGGPTGVEFSAELHDFVHEDLAYLYPELEKYAKITLLEAGDHILNMFDKRITEFAEQKFARDGINVKLGSMVVKVGENEITSKERSTGEIVTIPHGMVVWSTGIGARPEIVEFMKQLGQINRRALVTDEWLRVEGSDNIYALGDCATVNQRRVMEDIAVIFSKADKNNSGKLDLKEFKDVVDDIIERYPQVEIYLKKNQMKDMASLLKKSQESGISVDIEYFKEALSKVDSQMKNLPATAQVAAQQGVYLADCFNRMEDCERYPEGPLRFRGVGRHRFRPFSSASRRLDFNWSEHPVALVFSVYKQTSELENKVFGGWGLGKTILVWILSLTPATEIHDYSERLICLNWSIALVSEQALPENKLLQLLVVGSSIAVGTVVDIQMRRKKLLIVCVFIEETGGRGVKHVSKVVLGDGILYS 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01510 1254 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 655 1016 - -
Vimu5g01510 1254 PRINTS FAD-dependent pyridine nucleotide reductase signature 667 686 - -
Vimu5g01510 1254 PRINTS FAD-dependent pyridine nucleotide reductase signature 831 849 - -
Vimu5g01510 1254 PRINTS FAD-dependent pyridine nucleotide reductase signature 959 981 - -
Vimu5g01510 1254 PRINTS FAD-dependent pyridine nucleotide reductase signature 770 788 - -
Vimu5g01510 1254 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Vimu5g01510 1254 Gene3D - 657 1014 - -
Vimu5g01510 1254 Gene3D - 95 480 - -
Vimu5g01510 1254 SMART efh_1 430 458 IPR002048 GO:0005509
Vimu5g01510 1254 SMART efh_1 991 1019 IPR002048 GO:0005509
Vimu5g01510 1254 Pfam Pyridine nucleotide-disulphide oxidoreductase 105 431 IPR023753 GO:0016491
Vimu5g01510 1254 Pfam Pyridine nucleotide-disulphide oxidoreductase 665 990 IPR023753 GO:0016491
Vimu5g01510 1254 Pfam EF hand 434 455 IPR002048 GO:0005509
Vimu5g01510 1254 Pfam EF hand 995 1016 IPR002048 GO:0005509
Vimu5g01510 1254 MobiDBLite consensus disorder prediction 593 616 - -
Vimu5g01510 1254 SUPERFAMILY EF-hand 429 1051 IPR011992 -
Vimu5g01510 1254 ProSitePatterns EF-hand calcium-binding domain. 1000 1012 IPR018247 -
Vimu5g01510 1254 SUPERFAMILY FAD/NAD(P)-binding domain 832 984 IPR036188 -
Vimu5g01510 1254 SUPERFAMILY FAD/NAD(P)-binding domain 664 883 IPR036188 -
Vimu5g01510 1254 SUPERFAMILY FAD/NAD(P)-binding domain 104 322 IPR036188 -
Vimu5g01510 1254 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
Vimu5g01510 1254 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 96 455 - -
Vimu5g01510 1254 SUPERFAMILY FAD/NAD(P)-binding domain 270 424 IPR036188 -
Vimu5g01510 1254 ProSiteProfiles EF-hand calcium-binding domain profile. 987 1022 IPR002048 GO:0005509
Vimu5g01510 1254 PANTHER NADH DEHYDROGENASE 99 643 IPR045024 GO:0003954|GO:0006116
Vimu5g01510 1254 MobiDBLite consensus disorder prediction 588 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01510 Vimu-Chr5 26298444 26311900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01510 107 557 EF-hand Containing Proteins AT4G28220 69.248 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01510 K03885 - gmx:100793566 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01510 5 26298444 26311900 Vimu5g01510 5 26298444 26311900 ECH