Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01504 ATGAAGAGCGATTCCAATGGCTCTGTCTCTCCTTATTCTCCCAAACCCAGAACCCGTATCGTCAGTTCTCGGTTCATGTCTCCAAACTCGACCGCTTCGCCTGAACCTGGTTCAGGCTCCCCGCTCGGCCGGTTCAACCGATTGGCGAGGAAAGACTCCACCACTCTCGCCGATCACTTTGGCAACGAGAGGCTCAAAGAAAGGGAAGAACGCCACCAGCATCAGAATAAGACACCCGCAAACAAAACAGGCTCTGTTTTTTCTGCTCTCACGAAGCAGAGAAGCTGCAGGGAGTTCAGAAACAACAGTAATTGCTTAGAAGAAAACGATCAAGATCGACACGTTGTTGGTAGGACCACGAAGAATGGTGTCTCCGGAAAGTCTCCTTCTCCTTCTCCTTTTCCTGTGGTGAAGAAACCGAGTTCTTATTTTGATCCAGCGAGACACTCTCTGGATGAGAACACCTTTAAGGGGAGCTTTCTTTGTGCTAAGAACTCAATTGATTCGGAATCGGAAAATAGGAGTTTGGATTCTGTTCCTCTGGAAAGAACATTTAGTTCAAGGAAACTGGGTAGGGAGGTTTCTTCTAAGTACATGGCAGAGTGTGGCAGAAGAGGAGAAGCTTCTGATTCAGACCCTTTATCTTTTGATGATTCATGGATGATGAAGAAGAATATGACCCAGAAAGCGGTGAAGAAGGCTAACTCGTTTATCGGGTACATGAGTTCCAAGTCTCAGTGGGCATTGTCTCCAGGGAGATCAGGATCACCACCTTTGTCTTTCGAAAGCAAGGATAAGGATAAGCCATTGTCGTTTTCAAACTTGAAGCCTCCACACAAGCGAGTGGAGAAGATTCTGAGCATGGGTTTTGATCTCTTCAGGACTAAGAAATCGCTTTCTACGAGTGAGGTGGTTCATCAGTTGCGTCTGCTTCATAACCGGTTGATCCAGTGGCGGTTCGCAAATGCTAGAGCTCACACTGTGAATCACTCCATGTCTCTTCAGGCTCAGATGAAGTTGTTGGAAACGTGGGGATGCATGGAGAGACAACATTTAGCTGCAATTACCACAATGAGAGAGTGTTTGCATTATGTTATATGCAAAGTTCCTCTATTGAATGGGGCAAAGGTGGATATACCATTAGTATCCATTACTGAGCGTTATGCATCTGATCTAACAGATTCCATCGTGGCTGTGTTATCTAGTTTTTTACCTTTGGCTTATAAAACATCTGAGTTGATATCAAAGTTAGCAAGAATTGTTGCGGAAGAGAAATTGCTCTTACAAGAATTTAATGATGTGTTCCATGACATATGTGTTCTTGAGGTAACTAAATTTCTAATTTTTTCATGA 1353 0.4427 MKSDSNGSVSPYSPKPRTRIVSSRFMSPNSTASPEPGSGSPLGRFNRLARKDSTTLADHFGNERLKEREERHQHQNKTPANKTGSVFSALTKQRSCREFRNNSNCLEENDQDRHVVGRTTKNGVSGKSPSPSPFPVVKKPSSYFDPARHSLDENTFKGSFLCAKNSIDSESENRSLDSVPLERTFSSRKLGREVSSKYMAECGRRGEASDSDPLSFDDSWMMKKNMTQKAVKKANSFIGYMSSKSQWALSPGRSGSPPLSFESKDKDKPLSFSNLKPPHKRVEKILSMGFDLFRTKKSLSTSEVVHQLRLLHNRLIQWRFANARAHTVNHSMSLQAQMKLLETWGCMERQHLAAITTMRECLHYVICKVPLLNGAKVDIPLVSITERYASDLTDSIVAVLSSFLPLAYKTSELISKLARIVAEEKLLLQEFNDVFHDICVLEVTKFLIFS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01504 450 MobiDBLite consensus disorder prediction 1 37 - -
Vimu5g01504 450 MobiDBLite consensus disorder prediction 51 77 - -
Vimu5g01504 450 Pfam QWRF family 189 337 IPR007573 -
Vimu5g01504 450 Pfam QWRF family 334 429 IPR007573 -
Vimu5g01504 450 MobiDBLite consensus disorder prediction 260 275 - -
Vimu5g01504 450 PANTHER AUGMIN FAMILY MEMBER 6 337 - -
Vimu5g01504 450 MobiDBLite consensus disorder prediction 246 275 - -
Vimu5g01504 450 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01504 Vimu-Chr5 26252467 26255068 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01504 - - var:108339347 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01504 5 26252467 26255068 Vimu5g01504 5 26252467 26255068 ECH