Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01496 ATGGCTTCCCAACACGAAAGCGGGTTGAGTATCGACCCGATTCCTATTGGGGTCGAGACAACAATGGCTTCGCAACAGGAGAATCGGTTGGATATTGACCCGAATCCAGTTGGGGTGGAGACCCAGGAAGCGCAGACAGAAAAGTTTGCGACTTTGGGGTGTGTTCCTCCTATTGAGGAAGGTGTGGAGAAGATCAATTTGCTGGATTCCTCTCTTTCTTTTTCGATTGAGGAGAACGGTGATAAGGATGACAGCGGAAGTGATAGTGATAGTGACAGTGATAGTGAAAACGGGAGTGAGAGCGAAAGCGGAAGTGAAAATTCAGGGTCTGAAAGTTCTGATTCTGGTAGTGAAAGCAGTAGTAGTAGCGGCAGTAGTACTAGTGATAGCGAAGAGGAGAGTGATGATGACGACGACGATGACAACGAGGTACAAGTTGAAGAAGGGGAGATTAGTTCTGATGAAGAAAAGGTAGCTAGTTGGAGCATGGTTGATGATGATGCCGATCATGATGATGAAGATGGTGATGCTGGAGTTGGACCCATCAGGTCAAAGAACGAGCTTCAGAATCTGCCCGTTGTTCCTCCAGTCAATGCTGCTTTGGAACCACACCATCAAACGTTGCCAGTGGGAATCATTACTTCTATTCTTGGTGCTCAAGTCATTGTGGAAGGAGTGGAGAAGCATGACCCTCTTAATGAGGGTTCTATTCTTTGGTTGACTGAAAGTCGAAAGCCACTAGGTTTAATTGATGAAATCTTTGGACCAGTCAAGAACCCTTTTTATATTGTTAGATATAATTCTGAAAGTGAAGTTCCTGAAGGGATCAATGGGGGAACCTTGATCTCGTTTGTTCCAGAATTTGCTGAGCATGTGCTTAATAACAAGGATCTTTATAGGAAAGGGTACGATGCATCGGGTGCAAATGATGAAGAGTTATCTGATGAAATGGAGTTTTCAGATGATGAGAAAGAGGCTGAATACAAGAGAATGCAAAGAACTACAAAAAGAGGTGTAAATGATCAAAATCACGGTAAGAAAAAAAATAACAGAAAGAAATTTTCACCTAAAGAGCATGCAGCACCATCCATGCCTGATGCACCTGCTGCACCTTTGGTTAGTAATGGAAATTGTCCTCCTTTTCAAGGCAGTGGACAAGCTCTGTTGGGTGGAACTGCCACAGTTTCATCATTTCCCTACTCCAACGCAGCGCCCCCCAACTTTGCTACTCATGGAATTTGGACACAAGGAACATTTCCACAGCAGCCACAGAATGCTATATTTCCTAATGGTTTTCCTGCGAATGGGTTATCATGGTTCCCACAAAACACTCAAATTCCTCCACAGCTGCCAATGCCAGGAATTCCATTTCAACAGCAAGTACATGGCAATCAGGGATCTCTTTCCTCAACTATGCTACCTGGGATGCAGCCCAATATGTTTGCTCAATCCATATATGCAGCAGGGCTTGTTGGTCAAAACCAAATGACATTTGGGATGGGATCACCCTTCCCACAGCTTCAGCCACCTGCACAACAGGGATTTCCATCCAATTCTGGCGCGCCCCCTCAGTTTCATGCACGTCCATCTGGTAATCGTGGAAGAAAAACATTTCATGGAGGAAGGAATGGGTGGCGACCAACCAAGTGA 1650 0.4503 MASQHESGLSIDPIPIGVETTMASQQENRLDIDPNPVGVETQEAQTEKFATLGCVPPIEEGVEKINLLDSSLSFSIEENGDKDDSGSDSDSDSDSENGSESESGSENSGSESSDSGSESSSSSGSSTSDSEEESDDDDDDDNEVQVEEGEISSDEEKVASWSMVDDDADHDDEDGDAGVGPIRSKNELQNLPVVPPVNAALEPHHQTLPVGIITSILGAQVIVEGVEKHDPLNEGSILWLTESRKPLGLIDEIFGPVKNPFYIVRYNSESEVPEGINGGTLISFVPEFAEHVLNNKDLYRKGYDASGANDEELSDEMEFSDDEKEAEYKRMQRTTKRGVNDQNHGKKKNNRKKFSPKEHAAPSMPDAPAAPLVSNGNCPPFQGSGQALLGGTATVSSFPYSNAAPPNFATHGIWTQGTFPQQPQNAIFPNGFPANGLSWFPQNTQIPPQLPMPGIPFQQQVHGNQGSLSSTMLPGMQPNMFAQSIYAAGLVGQNQMTFGMGSPFPQLQPPAQQGFPSNSGAPPQFHARPSGNRGRKTFHGGRNGWRPTK 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01496 549 Gene3D Probable tRNA pseudouridine synthase domain 179 285 IPR038664 -
Vimu5g01496 549 MobiDBLite consensus disorder prediction 100 128 - -
Vimu5g01496 549 SUPERFAMILY Translation proteins 209 270 IPR009000 -
Vimu5g01496 549 MobiDBLite consensus disorder prediction 501 525 - -
Vimu5g01496 549 MobiDBLite consensus disorder prediction 129 150 - -
Vimu5g01496 549 MobiDBLite consensus disorder prediction 75 160 - -
Vimu5g01496 549 MobiDBLite consensus disorder prediction 83 99 - -
Vimu5g01496 549 MobiDBLite consensus disorder prediction 305 378 - -
Vimu5g01496 549 Pfam Gar1/Naf1 RNA binding region 209 289 IPR007504 GO:0001522|GO:0042254
Vimu5g01496 549 MobiDBLite consensus disorder prediction 323 345 - -
Vimu5g01496 549 FunFam H/ACA ribonucleoprotein complex non-core subunit NAF1 179 285 - -
Vimu5g01496 549 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 25 517 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Vimu5g01496 549 MobiDBLite consensus disorder prediction 501 549 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01496 K14763 - gmx:102661630 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01496 5 26145851 26148267 Vimu5g01496 5 26145851 26148267 ECH