Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01119 ATGCCTCCCGTCGCTCCTCGATCCGGCGATGCCATATTCGCCAACATCGAACGCGTTTGGTTGGTTGGTTTTTTCAGGGGTTATAATATTGGAATCCGTTTGATTGATGAGTTTTTAGCTAAGTCTAATGTCTCAAGATGCAACGATTTCAGAGAGACTACTGATGTAATTGCAAAGCTTGCTGAAATTAACTTGCAATTTAATGTTGTTGGTAGTATTAAAAAGGGGATGCTGTTGACAAGTGCTCTAAGGATGCTTGTTAAGAAATCAGTAAATAGAATGTTTTTCTCTGAAATCATGGTTGGTTTTAAAATGTTCCTTGGTGTTACTGCATCTGTGACCAATTGGGATGCAGATGGAACATGTTGTAGTATTGTCTTGGAGGATAATCCTTTGGTAGATTTTGTTGAACTTCCTGACAACTGCCAAGGTCTGTACTATTGCAACATCTTAAGTGGAGTCATTAGAGGAGCCTTAGATATGGTGTCAATGAAGACTGAGGTAACTTGGCTCCGTGATGTGCTTCGAGGTGATGATGTGTTTGAGTTGCAGGTAAAACTTCTCAAGCATGTTCCAGAAGAGTATCCATACAAAGATGATGAGTGA 606 0.401 MPPVAPRSGDAIFANIERVWLVGFFRGYNIGIRLIDEFLAKSNVSRCNDFRETTDVIAKLAEINLQFNVVGSIKKGMLLTSALRMLVKKSVNRMFFSEIMVGFKMFLGVTASVTNWDADGTCCSIVLEDNPLVDFVELPDNCQGLYYCNILSGVIRGALDMVSMKTEVTWLRDVLRGDDVFELQVKLLKHVPEEYPYKDDE 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01119 201 Gene3D Trafficking protein particle complex subunit 3 24 200 - -
Vimu5g01119 201 CDD TRAPPC3_bet3 27 189 IPR016721 GO:0030008|GO:0048193
Vimu5g01119 201 SUPERFAMILY Ligand-binding domain in the NO signalling and Golgi transport 26 60 IPR024096 -
Vimu5g01119 201 PIRSF TRAPP_1_Bet3 25 95 IPR016721 GO:0030008|GO:0048193
Vimu5g01119 201 PIRSF TRAPP_1_Bet3 92 200 IPR016721 GO:0030008|GO:0048193
Vimu5g01119 201 Pfam Transport protein particle (TRAPP) component 101 186 IPR007194 -
Vimu5g01119 201 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 27 200 IPR016721 GO:0030008|GO:0048193
Vimu5g01119 201 SUPERFAMILY Ligand-binding domain in the NO signalling and Golgi transport 101 191 IPR024096 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01119 K20302 - gmx:100306217 278.485