Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01116 ATGCGCGCCCCCGCCGGAAGAAACCTATGCACTCTCGCCGCCCTCTTCCGCTCTCGGTTAATCCGCAAACCCAACACCAGTGTTGAATCCGTTATAGAACCTTCTCCTGAATTTGAAGTCGGTTTTGGTTCTAAACTGCAACATTCCTTAGAACACGACCTCGCTGGGGATTTGGTCGGCAAAAATGAGGTTACTGTTCAGATTTCTGCTTTACTGTGCTCTAAACAGGACAAGGGGTCTGGTTACGAGAAAGTCGACGAGGAAGAAAAAAGGAAAAGTGTGTTAGAAATGCCATGGATAGCAGACCTGTCTCATGGTAATCTATCGGGCAAACGAAAGGAGGTAGTGCGTGAGCGAAAGCATAAGTGGATTTTTAAATACTCTAGCAATGACCGTTTCAACAGGTTAATTAAATTGTGTGCACATAGGCTAGGAGCAACAAAAACAGTTAATGTGTTTAGTCACTTGGGTCGAAAAACAGGCGTAAAGGAGTACAATGCATTGATAAAAGTGTGCATAGAGAAGGCTAGGGCGACTGATGATGAATACATAGCTGTAAATGAGATCAGTAAGGCTTTTCACCTTTTCAAATCAATGAGGGATTGTGGATGTCCGCTGGAAGAGCAAACATATGGTCCACTTCTCTGGTATCTAATTGATATGGGTCTGGTTCAAGAATTTCAACTTTTCTCTGATGTTATCAAAGCTGAGAATCCTCGTTCAGCTTCACGATTGGGTTACTATGAAATGTTGTTGTGGTTAAGAGTTGACAATGAAGAAATGATCCGGGACATTTGCGAGTTTATTATAGTTGATGATAGAGATTCAGCCTTACGAGATTATGATGAAGATAATATTTCAAACTTCATTGTTAGTTATGCTGTTAGCATTCCTAATTTAGCGGTTGAGGACATCATGGCAAAAGTCAATAATTTGCATGAATTACTAGAAGTCTTGCTTTCATCGTCATCATATGAAAAGCTTATTTTGCATTGCTGTGGTTTAGACCAGGTGGGCGATGCTCTAGATATTGTTGAACAAATGTGTGATGCTGGCTTTAACTTGTCAACTGACGTGTTACAATTCATATTACAAATCTGCGAGGAATCTTTTGAATATATTTGGTTTGAAGGCGCATACAAAATAATTGGTGACTTAGAGGAAATGAATGTTAAACTTACGGCAAACATGTTCAATGCTATAATGGCAGGATATTTTCGAGAGAAGAATATCAGTGCTGGGTTAAGGGTCCTGAAACACATGCAAGGTGCCAATGTAAACCCTGATTCTCAGACTTTCAGCTATTTGATTAACAATTGTGAAACGGAAGAGGATATAATGAAGGTACCTTAA 1353 0.4006 MRAPAGRNLCTLAALFRSRLIRKPNTSVESVIEPSPEFEVGFGSKLQHSLEHDLAGDLVGKNEVTVQISALLCSKQDKGSGYEKVDEEEKRKSVLEMPWIADLSHGNLSGKRKEVVRERKHKWIFKYSSNDRFNRLIKLCAHRLGATKTVNVFSHLGRKTGVKEYNALIKVCIEKARATDDEYIAVNEISKAFHLFKSMRDCGCPLEEQTYGPLLWYLIDMGLVQEFQLFSDVIKAENPRSASRLGYYEMLLWLRVDNEEMIRDICEFIIVDDRDSALRDYDEDNISNFIVSYAVSIPNLAVEDIMAKVNNLHELLEVLLSSSSYEKLILHCCGLDQVGDALDIVEQMCDAGFNLSTDVLQFILQICEESFEYIWFEGAYKIIGDLEEMNVKLTANMFNAIMAGYFREKNISAGLRVLKHMQGANVNPDSQTFSYLINNCETEEDIMKVP 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01116 450 Pfam PPR repeat family 397 440 IPR002885 -
Vimu5g01116 450 NCBIfam pentatricopeptide repeat 397 429 IPR002885 -
Vimu5g01116 450 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Vimu5g01116 450 Gene3D Tetratricopeptide repeat domain 129 374 IPR011990 GO:0005515
Vimu5g01116 450 Gene3D Tetratricopeptide repeat domain 375 449 IPR011990 GO:0005515
Vimu5g01116 450 PANTHER OS02G0132600 PROTEIN 50 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01116 Vimu-Chr5 18789297 18802609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01116 165 438 Miscellaneous Gene Families AT4G11690 22.340 3.77e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01116 - - cam:101502375 380.948