Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01075 TTGAAAGGGTGTCTGTTTTTTCGTAATACGCATAATCCCATACAAACCATGTCCAACGGAGGCTTATCACTTCCAATTTCTGGCACTGGTGCAAAACCTCCCTTCACTCGACCCACTGCAAATTTTCATCCCTCCGTTTGGGGCGATCGATTTCTTTCCTATGTTCCTTCTTCCGCTGAAAGTGATAGCCGTATTCAACAAGTTAAACTACTAAAAGAGCACGTGAGGAAGAGCCTTGTTTCATCTATTGATGATAACAATTTCTCTTTTAAATTGAACTTCATTGATTCAGTCCAACGTTTGGGTGTGTCTTACCATTTTGAGCACGAAATTGACACTGCTCTATCTCAAGTTTATGACATTTCAACAAAGGACAATAATATAATAGCTCACGACAACGATGATCTTTACCACACGACTCTACTCTTTCGGCTGCTTAGACAACATGGATACCGCGTTTCTTCAAGTAGATGGTGGTATAAGGATTTGGATGTGTCATCCAACTTACCTTTCACACGAGATAGGATCGTAGAATGTTACTTTTGGGCATTAGGGGTATACTTTGAACCACAATATTCTAGATGGATAATAGCAAAATTAGCAACTCTAGGTACCATCATTGATGACATCTACGATGCTTATGGAACCATAGAAGAACTTGAGCTTTTCACCAATGCAATTGACAGGTGGGATATTAGTTGCTTGGTTGATCTTCCAAAATACATGCAATTTTGTTATAAGATAAAAAGACTAGTCCAGGCTCAGATGATTGAGGCAAGATGGTGCCATTCCAACCACGTTCCAACAGTGGAGGAATACATGCAAGTAAGAACAATATCCAGTGGTTACCCTCTCTTGATTACCTCATCCTTCCTAGGCATGGAAGATACAACAGAGGAGATCCTTCTATGGGCAACGAATGAACCAGTAATTATTGCAGCTTCTATAGTTCTGCTTAGGATCATGGATGACATTGTTGGAGATGAGTTTGAACAGGAGAGACAACATGTTGTTTCAAGCATTCAATGCTATATGAAAGAGTATAAAATATCAAGGAAATGTGCCATCGAAGAACTACGCAAGTTAGTTGAGAATGCTTGGAAGGACATAAACGATGCATGCTTAGCTCCTACTCAAGTACCAATGAAATTTCTTATGCGTGCGGTCAACTTTGCACGTGTGGTCGACGTGCTTTACAAAGACGAAGATATCTTTACAAATGCTGGAGGGATAATGAAAGATCACATTGAAGCTTTATTAGTTAAAAAGATGTCTGTATACACTTAG 1287 0.3955 MKGCLFFRNTHNPIQTMSNGGLSLPISGTGAKPPFTRPTANFHPSVWGDRFLSYVPSSAESDSRIQQVKLLKEHVRKSLVSSIDDNNFSFKLNFIDSVQRLGVSYHFEHEIDTALSQVYDISTKDNNIIAHDNDDLYHTTLLFRLLRQHGYRVSSSRWWYKDLDVSSNLPFTRDRIVECYFWALGVYFEPQYSRWIIAKLATLGTIIDDIYDAYGTIEELELFTNAIDRWDISCLVDLPKYMQFCYKIKRLVQAQMIEARWCHSNHVPTVEEYMQVRTISSGYPLLITSSFLGMEDTTEEILLWATNEPVIIAASIVLLRIMDDIVGDEFEQERQHVVSSIQCYMKEYKISRKCAIEELRKLVENAWKDINDACLAPTQVPMKFLMRAVNFARVVDVLYKDEDIFTNAGGIMKDHIEALLVKKMSVYT 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01075 428 Pfam Terpene synthase, N-terminal domain 47 156 IPR001906 GO:0010333|GO:0016829
Vimu5g01075 428 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 43 157 IPR008930 -
Vimu5g01075 428 Coils Coil 345 365 - -
Vimu5g01075 428 SUPERFAMILY Terpenoid synthases 156 421 IPR008949 -
Vimu5g01075 428 Pfam Terpene synthase family 2, C-terminal metal binding 243 369 - -
Vimu5g01075 428 Gene3D - 86 155 IPR036965 GO:0010333|GO:0016829
Vimu5g01075 428 CDD Terpene_cyclase_plant_C1 37 421 IPR044814 GO:0010333|GO:0016102
Vimu5g01075 428 Gene3D Farnesyl Diphosphate Synthase 157 247 IPR008949 -
Vimu5g01075 428 Gene3D Farnesyl Diphosphate Synthase 249 424 IPR008949 -
Vimu5g01075 428 Gene3D Farnesyl Diphosphate Synthase 44 85 IPR008949 -
Vimu5g01075 428 PANTHER OS04G0344100 PROTEIN-RELATED 37 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01075 Vimu-Chr5 17661413 17666082 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01075 K15803 - pvu:PHAVU_011G1441000 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01075 5 17661413 17666082 Vimu5g01075 5 17661413 17666082 ECH