Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01074 ATGTCTAATGGTGGCTTATCACTTCAAATTTCCGGCAGTGGTGAAAAACCTCCCTTTCGACCCACTGCAAATTTTCATCCCTCAGTTTGGGGCGATCGCTTCCTTTCCTCTGTTCATTGTTCCGCTGAAAGTGATAGCCGTATTCAAGAGGCTAATCTATTAAAAGAGGACGTGAGGAAGAGGCTTGTCTCACCGATTGATGATAACAATTTCTCTCTTAAATTGAACTTCATCGATTCAGTCCAACGTTTGGGTGTGTCTTACCATTTTGAGCACGAAATTGACAATGCTTTATGTCAAATTTATGACATTTCAATAAAGGAGAATAATATCATAGCTCACTGTGATGATCTTTACCATACGGCTCTACTCTTTCGGCTCCTTAGACAACATGGATACCGCATTTCTTCAAATCAGACCGGAAAGTTTAAGGAAAGTGTAGCTGATGATATTGAAGGAATGTTTAGCTTGTATGAAGCAGCCCAACTAAGATGTCATGGAGAAAAAGTACTTGAAGAAGCACACATTTTCAGTCTGGAACAATTAACTAAGTCTATAACCACCCAATTAAGTTGTTCTCTTGCGGCACGATTGCAACATACTTTAAGACAATCACTTCGCCATGGTTTGCCTAGATGGTGGACTAAGGATTTAGATGTCTCAACCAATTTACCTTTTACAAGAGATAGGATCACAGAGTGTTGTTTTTGGAATTTAGGGGTGTATTTTGAGCCACAATATTCTAGATGGATGACAACAAAATTAACAGCTCTAGCTTCCCTCATTGATGACATGTACGATGCTTATGGAACTATAGAAGAACTTGAGCTATTCACCAATGCAGTTGAGAGGTGGAATATTTGTTGCTTGGTTGATCTCCCAAAATACATGCAATTATGCTATAAGGCAATTTTGGATGTATTTGAAGAAATTGAGCTAGAGATGAGAAAGAAAGGAAAAGTATATTGCATCAAGTATGTCAAGAAAGAGATGAAAAGACTAGTACAGAGTCATATGGCTGAGGCAAGATGGTGCCATTCCAACCACACTCCAACTGTGGAGGAGTACATGCAAGTAAGAACAACGTCCGCTGGCTACCATCTGTTGATTACCACATCTTTCTTAGGAATGGAAGATACAACAGAGGAGGTCCTTATATGGGCAACGAATGAGCCAGTAATTATTACAGCTTCTGCAGTTATTGCTAGGATCACGGATGACATTGTTGGAGATGAGTTTGAACAAGAGAGACAACATGTTGTTTCAAGCATCCAATGCTATATGAAGGAGCATAAAATCTCAAGGAAATGTGCCATTGAAGAACTACGCAATTTAGTTGAGAATGCTTGGAAGGACATAAACGATGCATGCTTAGCTCCTACCGAAGTACCAATGAAATTTCTGATGCGTGTGGTCAACTTCGCACGTGTGATCGACGTGCTTTACAAAGACGAAGATAACTATACAAATGCAGGAGGGATAATGAAAGATCACATTCAAACTTTATTAGTTAAAAAGATGTCTGTATAA 1530 0.3922 MSNGGLSLQISGSGEKPPFRPTANFHPSVWGDRFLSSVHCSAESDSRIQEANLLKEDVRKRLVSPIDDNNFSLKLNFIDSVQRLGVSYHFEHEIDNALCQIYDISIKENNIIAHCDDLYHTALLFRLLRQHGYRISSNQTGKFKESVADDIEGMFSLYEAAQLRCHGEKVLEEAHIFSLEQLTKSITTQLSCSLAARLQHTLRQSLRHGLPRWWTKDLDVSTNLPFTRDRITECCFWNLGVYFEPQYSRWMTTKLTALASLIDDMYDAYGTIEELELFTNAVERWNICCLVDLPKYMQLCYKAILDVFEEIELEMRKKGKVYCIKYVKKEMKRLVQSHMAEARWCHSNHTPTVEEYMQVRTTSAGYHLLITTSFLGMEDTTEEVLIWATNEPVIITASAVIARITDDIVGDEFEQERQHVVSSIQCYMKEHKISRKCAIEELRNLVENAWKDINDACLAPTEVPMKFLMRVVNFARVIDVLYKDEDNYTNAGGIMKDHIQTLLVKKMSV 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01074 509 FunFam Isoprene synthase, chloroplastic 180 497 - -
Vimu5g01074 509 SFLD Isoprenoid Synthase Type I 199 508 - -
Vimu5g01074 509 SFLD Terpene Cyclase Like 1 C Terminal Domain 199 508 IPR034741 -
Vimu5g01074 509 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 26 216 IPR008930 -
Vimu5g01074 509 SUPERFAMILY Terpenoid synthases 198 507 IPR008949 -
Vimu5g01074 509 Pfam Terpene synthase family, metal binding domain 198 452 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vimu5g01074 509 Gene3D Farnesyl Diphosphate Synthase 212 497 IPR008949 -
Vimu5g01074 509 Gene3D Farnesyl Diphosphate Synthase 27 68 IPR008949 -
Vimu5g01074 509 Pfam Terpene synthase, N-terminal domain 30 202 IPR001906 GO:0010333|GO:0016829
Vimu5g01074 509 CDD Terpene_cyclase_plant_C1 20 504 IPR044814 GO:0010333|GO:0016102
Vimu5g01074 509 PANTHER OS04G0344100 PROTEIN-RELATED 198 495 - -
Vimu5g01074 509 Gene3D - 69 210 IPR036965 GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01074 Vimu-Chr5 17611270 17615434 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01074 K15803 - gmx:100802427 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01074 5 17611270 17615434 Vimu5g01074 5 17611270 17615434 ECH