Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01068 ATGGCCACCAAATCGTCCACTGAATCCAAAGATGAAGGCGCCGATACGTCCAACTCGCCTTTCATTTCGGCGGCGGAGAAGGCCACCGGAGCTTCATTGGAGAAACTCTGCATCGACGAGATACTGCAGAAGTACTGCGGCGAGTTCGGGCGGTGGCAACTGAGGCACTTCGTGCTCACCAGTCTGGCGTGGGCCTTGGAAGCCTTCCACACGATGGTCATGATTTTCGCCGATCGCGAACCAGAGTGGCGGTGCCTCGACGGTGCGGCCGGTTGGGAATGCGACCCGAGCGCCAAAAGCGTGTGCCGGTTCGAACCGGGTTCGTGGGAGTGGATAGGGGACTCGACCGTTGTGGAATGGGGGCTGTTTTGCGCGGATAAGTTTAAGGTCGGGCTGGTTCAGGCCGTCTTCTTCGGCGGCTGTATGATCGGTGCTGGAACATTCGGTCACCTTTCAGACTCAGTCCTCGGAAGAAAAGGCTCTCTCACAGTGGTTTGTGCACTAAACACCATTTTTGGCACCTTGACAGCCTTCTCCCCTAGCTACTCTTTCTACATCTTCTTTCGCTTCCTCACTGGTTGCAGCACCGGTGGCGTTGGTCTCTGCGCCTTCGTCCTGGCCACCGAGCCAGTGGGTCCCAGATCCCGCGGCACCACCGGCATGTGCGCCTTTTACTTCTTCTCCTCCGGCATCGCGATGTTATCTGTCATCGCCTACATCTTTCCAACGTGGCGAAAACTCTATATAGCCTCTTCCATCCCCTCCCTCCTCTTCCTTCTCTTCATCCTCCCCTTCATTTCAGAGTCCCCAAGATGGTACCTCATTAGAGGAAGAAAATCCGAAGCAATGAAAGTCATCACTGCCATGGCTACCACCAATGGTAGCCACATCCCAAAAGGGGTTCGTCTAATCCTAGACCATCAATCACCACAATTACCACCACCACCACTATCATCCTTATCATGCAACAGCATTCAAGAACAGGTATTAGCAGAAGTCAACTCCTTAAGCGAGTCCCAAAATCAAGAGAAATTAGTCTCTGATTCTATCCTTCTGGGCTCACCCAAAGGATCGACATGCCACGCGGCGGTGGCTGGTTCGCTTGTCGACGTGATACGCTCGCCAATGACACGTTCGAGGTTGATCCTAGCCGTGGTCATCAATTTCCTATGCTCCGTTGTGTACTACGGCTTGAGCCTCAACGTGGTCAACCTTGAAACCAACCTCTATCTCACTGTAATACTCAACGCCGTGGCGGAGATGCCGGCTTTCATGATAACAGCGATTTTTCTGGACCGGTGGGGGAGGAAGCCGTTGACCATAGCGACGTTGTGGTTCAGTGGAGTGTTTTGCTTTGCGGGGAGTTTGGTGAGAAATGTTGGGGTGTGGAAGGGTGTGAGAATGATTTGTGGGATTTTGGGAATTTTTGGAATGGCGGGGACCTATAATCTGCTGTTCATATACACGGCGGAGCTGTTCCCGACGGTGGTAAGGAACGCTGCGCTAGGGTGCGCCACGCAGGCGGGGCAGATGGGTGCGATACTGGCGCCGCTGGTCGTCGTTATTGGTGGATCGTTTCCGTTTATGATTTTTGCTCTGTGTGGACTTGGTGGTGGACTTTTCGCGTTTTATCTGCCAGAAACATTGAACCAACCTCTTTATGATACGTTAACGGGAATGGAGGCTACGGAAAACAGCGTTACCTCTTCCATTGTATGA 1719 0.5305 MATKSSTESKDEGADTSNSPFISAAEKATGASLEKLCIDEILQKYCGEFGRWQLRHFVLTSLAWALEAFHTMVMIFADREPEWRCLDGAAGWECDPSAKSVCRFEPGSWEWIGDSTVVEWGLFCADKFKVGLVQAVFFGGCMIGAGTFGHLSDSVLGRKGSLTVVCALNTIFGTLTAFSPSYSFYIFFRFLTGCSTGGVGLCAFVLATEPVGPRSRGTTGMCAFYFFSSGIAMLSVIAYIFPTWRKLYIASSIPSLLFLLFILPFISESPRWYLIRGRKSEAMKVITAMATTNGSHIPKGVRLILDHQSPQLPPPPLSSLSCNSIQEQVLAEVNSLSESQNQEKLVSDSILLGSPKGSTCHAAVAGSLVDVIRSPMTRSRLILAVVINFLCSVVYYGLSLNVVNLETNLYLTVILNAVAEMPAFMITAIFLDRWGRKPLTIATLWFSGVFCFAGSLVRNVGVWKGVRMICGILGIFGMAGTYNLLFIYTAELFPTVVRNAALGCATQAGQMGAILAPLVVVIGGSFPFMIFALCGLGGGLFAFYLPETLNQPLYDTLTGMEATENSVTSSIV 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01068 572 ProSitePatterns Sugar transport proteins signature 1. 427 443 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu5g01068 572 ProSiteProfiles Major facilitator superfamily (MFS) profile. 56 550 IPR020846 GO:0022857
Vimu5g01068 572 MobiDBLite consensus disorder prediction 1 21 - -
Vimu5g01068 572 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 49 556 - -
Vimu5g01068 572 Gene3D MFS general substrate transporter like domains 117 560 IPR036259 -
Vimu5g01068 572 SUPERFAMILY MFS general substrate transporter 122 553 IPR036259 -
Vimu5g01068 572 Pfam Sugar (and other) transporter 127 289 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu5g01068 572 Pfam Sugar (and other) transporter 392 554 IPR005828 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01068 Vimu-Chr5 17339181 17348932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01068 10 566 Organic Solute Cotransporters AT3G20660 60.428 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01068 K08202 - gmx:100805613 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01068 5 17339181 17348932 Vimu5g01068 5 17339181 17348932 ECH