Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00838 ATGGGAGTGGTAATAATCGACGGCACCACCGTGCGCGACTTCGTCAACGACGCCGACGCGTTCGCGAAGAGCGTGGACGAGCAGTTCGTGGCTCTGGATCTCAACAACGACGGCGTCCTATCACGGTCGGAGCTCCGCACGGCGTTCGAGTCCATGCGCCTCATCGAGACGCACTTCGGCATCGACGTGACCACTACGCCGGAGCAGCTAGCCACGCTCTACGACTCCATCTTCGACAAATTCGACGGCGACCGGAGCGGTACCGTGGACCGCGACGAGTTCCGAGAGGAGATGAAGAGAATCATGCTCGCCATAGCCGACGGCCTCGGCTCCTTCCCTATCCAGATGATCCTCGAAGACGACCCCAACAGTCTCCTCCAGAAAGCTGCGGATCTTGAAGCTTCCAAGACCTGA 414 0.599 MGVVIIDGTTVRDFVNDADAFAKSVDEQFVALDLNNDGVLSRSELRTAFESMRLIETHFGIDVTTTPEQLATLYDSIFDKFDGDRSGTVDRDEFREEMKRIMLAIADGLGSFPIQMILEDDPNSLLQKAADLEASKT 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00838 137 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 1 121 - -
Vimu5g00838 137 ProSitePatterns EF-hand calcium-binding domain. 33 45 IPR018247 -
Vimu5g00838 137 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Vimu5g00838 137 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Vimu5g00838 137 ProSiteProfiles EF-hand calcium-binding domain profile. 20 55 IPR002048 GO:0005509
Vimu5g00838 137 Gene3D - 7 108 - -
Vimu5g00838 137 SUPERFAMILY EF-hand 25 99 IPR011992 -
Vimu5g00838 137 SMART efh_1 24 52 IPR002048 GO:0005509
Vimu5g00838 137 SMART efh_1 73 101 IPR002048 GO:0005509
Vimu5g00838 137 Pfam EF-hand domain pair 27 99 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00838 Vimu-Chr5 10841127 10841540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00838 1 136 EF-hand Containing Proteins AT2G44310 70.588 2.48e-67 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00838 - - gmx:100792416 241.121