Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00777 ATGGCTTTCAGGCAGAGAACACCAACTTTTCGTCCTAACCTTTCTATTCGTCGCGTCTATGAAACTTTTCAGCCACGTTCAGAGATAAAAGATCTCCCAGAAGCCTACCTTCTACGTCTTTATCTTCCTGGTTTTCAGAGGGACAGTGTAAAGGTAACCTATGTGGCCTCTTCACGAACGGTGAGAGCTACAGGAGAAAGACAAATTCAAGGCACGAGATGGTACCGATTTGACCAATCGTATCCCATTCCTGATTACTGTGAAGCAGAGGCACTTGGGGCAAAGTTTGAAACTCCAGTTCTCACCCTTACAATGCCAAAGAAGGCCACTTCACAAGAGAGAGGTGTTGTAGATGAACCAAAGCCTGATAAAAAACTCCAAGATACTACTACCACACCACAACCTTCAATTACGATTGAAAACACACGATCTTCAGAACCAATTAAGGATCAAGCTGTAGAAAGAGTTGGTCCTTTTGGTGAGCCTCAAATGGGGGAGAAGGAATTGGAGGCAAAACCAGGAACAGCCACAATGCAAAGAGATGAAAAGATTCAAAAGGGTCGAGAGGAATTTGAACCGAGACCAACACCAACAAGGACAGCCACAATGCAACAAGATGAAAAGATTCAAAAGGACATATCATCTGTGTCATCACCAAGGTCTGTTCGAAATTCATCCGGTCGGTTCTCAGCTATCGTCCGACCGGTTTCAACTTGCCCTTCACCCGTTTGGTTTTCCTCAGTCCCACCGGCCGTGCCAGCTCCATTAGTAGTATGCTCCACCTCCACGAGAATCTTCTTCTCACTTCCAGAGTTTTCCGGGTGCATCGCCATCCTTGTTTCATCAAAAATGACATCCCTACTAATGATTAGTTTTGAAGGTGAATCTAACCTCCATAACCTGTATCCCTTAACTCCGTCGGCGGTCGAAACAGCTGAAAAGCATCAAAAAGGTGAAGAGGAATTTGAACCTAAAGCAGCATCAACAATGGAACCAATCAGCAAAACAGATGCGCAGCCTCCAAAAGGTCAAGAGGAAGACGAGCTAAAAGCTGATATAACAAATGTTACCAGAAAGCCGACAGTTAAAGAGCAATTGAAGGAAAAGAAGACAGCGGAAACAAGAGATGAAGATTCGGAGAAAACAAGTTATAAAGATGCAGAGGGAACAACTGATGAAGATGAAGAGAAGGAAAGGATCACAAAAAGGGAAGTTAAAGAGGAACCTTCTAAATCAAGAAAGTCTGTGAAAGATAAGAAGCAGACTGATTTTGAACAGAAAGAAACCGAGACAGAAAAATTGTTAGCCAAGGAAGCAGAAACTTCTGCTACAAAAGCTCATAAGGAAAAGGAAAAGCAATCTAATGACATAACTACTCTTAAAAAGGAACTGAAGAGTGAAGAGAATGCAGTGGAAAAGGTTGGTTCTGTCTCCCAAGTTTTCACAAAATTTGCAGAAGGGGCATTGAATGAGGAAGAGAAAAAATTAGCAGCAAATATTGGTGCTGCAGTTCTTGTAATTGCTGCATTGGGATATTACGTATCTTATAGCTTTGTAAAGGAAGAGAAGTGGAAGAGGAGCGTGCTATCAATTGGGCCACTGTTGTACTTGAACTGGGCCATTGATGGGTTGCTGCTAGTGGAGGAAAAACAGGCCCCTGAAGCGTTGTTGCTGGCACTTGGAGGCGCTGCTGCCAACATGGGGTTTATTGAAAGAAATTTGGGCCGCTGCTGCACTAGACATATGCCACTTCTACAAATTAATTGGGTTGGCTGA 1776 0.4336 MAFRQRTPTFRPNLSIRRVYETFQPRSEIKDLPEAYLLRLYLPGFQRDSVKVTYVASSRTVRATGERQIQGTRWYRFDQSYPIPDYCEAEALGAKFETPVLTLTMPKKATSQERGVVDEPKPDKKLQDTTTTPQPSITIENTRSSEPIKDQAVERVGPFGEPQMGEKELEAKPGTATMQRDEKIQKGREEFEPRPTPTRTATMQQDEKIQKDISSVSSPRSVRNSSGRFSAIVRPVSTCPSPVWFSSVPPAVPAPLVVCSTSTRIFFSLPEFSGCIAILVSSKMTSLLMISFEGESNLHNLYPLTPSAVETAEKHQKGEEEFEPKAASTMEPISKTDAQPPKGQEEDELKADITNVTRKPTVKEQLKEKKTAETRDEDSEKTSYKDAEGTTDEDEEKERITKREVKEEPSKSRKSVKDKKQTDFEQKETETEKLLAKEAETSATKAHKEKEKQSNDITTLKKELKSEENAVEKVGSVSQVFTKFAEGALNEEEKKLAANIGAAVLVIAALGYYVSYSFVKEEKWKRSVLSIGPLLYLNWAIDGLLLVEEKQAPEALLLALGGAAANMGFIERNLGRCCTRHMPLLQINWVG 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00777 591 MobiDBLite consensus disorder prediction 109 145 - -
Vimu5g00777 591 Pfam Hsp20/alpha crystallin family 29 113 IPR002068 -
Vimu5g00777 591 MobiDBLite consensus disorder prediction 340 354 - -
Vimu5g00777 591 MobiDBLite consensus disorder prediction 312 326 - -
Vimu5g00777 591 CDD ACD_sHsps-like 28 107 - -
Vimu5g00777 591 Gene3D - 4 114 IPR008978 -
Vimu5g00777 591 MobiDBLite consensus disorder prediction 158 224 - -
Vimu5g00777 591 MobiDBLite consensus disorder prediction 310 433 - -
Vimu5g00777 591 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 18 123 IPR002068 -
Vimu5g00777 591 MobiDBLite consensus disorder prediction 197 224 - -
Vimu5g00777 591 SUPERFAMILY HSP20-like chaperones 9 114 IPR008978 -
Vimu5g00777 591 MobiDBLite consensus disorder prediction 127 145 - -
Vimu5g00777 591 MobiDBLite consensus disorder prediction 165 195 - -
Vimu5g00777 591 Coils Coil 443 470 - -
Vimu5g00777 591 MobiDBLite consensus disorder prediction 361 433 - -
Vimu5g00777 591 MobiDBLite consensus disorder prediction 112 126 - -
Vimu5g00777 591 MobiDBLite consensus disorder prediction 438 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00777 Vimu-Chr5 9607839 9620552 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00777 - - vun:114168942 621.698