Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00770 ATGGTTGCTGAAGGAACCAAAAGGCCTCAAATTTCATTACCTATACTACCACCTCCTCGGACAATCAATGTGCAGAAATATGCTGAATCCCGTGCCCTTGAGCTCCATAGTCTACAATCTATCATAGAAAACAGAGTGAACAGTGATTATAGGTCTCAAAGGAACAAGAGAAGAAGAACAACTGCATTTGACAACCAAATTGCAAGAAAAGGTTGTAGAAGAAAGAGGCAGAAAGTGGGAATAGTGGGCAAAGCCCTTGCTAAATCAGGTTTGGAGGAGGATGAACTAAAGAAGCTTCCTCGGCGTGTACGTAGAAGATATGAACTAAAGAATAACCCAGAGAATGGTTTTTGCACCTCCGGGGATGGAACCAAGAGGCTGAGAACTCATGTTTGGCATGCAAAGCGATTTGCTATGACCAAGCTTTGGGGTTACCATCTTCCTTTGTGTCTTCAAGGAAGGGCACTCTTGAAAAGGCTCAAAGAAGGGGTGCTTGTACACGATGCAAGCTATTACACTGCTGTGCAATTGGAGGGTCCAGAGTCTAGACTTTCTAATGCCCTGTTCTCATTGAAACATATTGAGATGCTTGCTCCAAATAATTATTGTGGGCTCTCAGCCCCAGATAGTGATGATTTAGATTCATTGACGTCGGTATTGAGATCAGTACTAGAACCCTCTCCAACAACTACACATCCTGAAAATCTTGAGGACTCTTTAATCTCCGGTGTAACCTATGGAAGTGCAATGATGCGTCAAGATGGAGGCCTCATTTGTCCACCAATTGCTCCTGTGACCTATATGTGGCAACCAACTTCCCAACAAAATATAAGTACACGGCTAGATGAACAAAATCATTATACTTCTTTTGGACAACATGGTATCAGTAGTGATTCGAACAAACATAGTGTTGAATTATGTGAAAAATCAGACAAAATGAAGCATGGTTCTTCATTTAGACACCTTTGGGTGTGGATACATGCTTCTGCCTTTGAAGAAGGATTTGATAATCTAAAAATTGCCTGTCGGAAAGAGGGTCAACTTGCAAAATTGGAATTATTTGGATTAGGGGCATTTCAACTTCTTCAAAAGATACTTCATCCTGTTGGAGGTATTTCAGAGAATCATTGGCAATTAAAGAAACATATAGTGATTGAAGAAGGGTGTGTTTCTCAGAATAGAAATTCAACCACACTGAAAAATGGAGATAGATTTTCTGCTTGTGCTATGTTACCTCTTAATGTTAAGGATCCTCGAGAATTGCCATGGAAGAGGAATGTTGTTCCAGTGGAGCACATTTCAACTAAGACTTTGAGTGATGCATCAGAAACAAAGTGCAAAGAGCTTGCTGAACTGGGAGGAATTTTGGAAGAGAACAAAGATTTATGTTCATTATCATTGTCAAATCTTGAAGATTGCCAGTCTAATGTTGATGATCTATGGTATGCTACCGCCAGAGGGTTGAGCCCCCCAGTGGAAGACAGTCTCCTTTCCAAGGAGAAACATCATGAACGAATGGTTAATTTCTGCCTTGTTGATACAGATTCTGGAGATGCCAGCTCTTCAACTAAGGTGCAGAGCTCGAGATCTTGCCCTATTCTTCTTTTAAAAAATGATGTGAAGGAATTGAGCATTGGTTGGGTCAAAGCTTTCTGGATTCCGCTTATCTCCAATGGGGCACGTGCAATAGGTTTGCAAGAGAAGCACAGGATTACGTGTGAAATGGGGCTACCAGTTTTCCCTTCAGATTTTCCAGACTGTAAGGCATACTCTTGTTTAATGGAAGAAAAAGAAGCTGCATTTAATAAAAAAGAAGAACTTCGTCCTCCATCCATAAGGCATTTGAGAGTTCCCATCCAACCTCCATGGGGTATTGTTCGCCTTACTTTTGACAAAATGATTAGTTCAATTAAGACTCCTGATCTTTCAACTAGGGAAGATTTGACCAACTCTAGTTCATTACCAAACCCTTACCCTGGTAGCTTTAAAATCTCGAACTCTAACTCTTGGAGTAATTCGTTTGATGGAACTGTAGTTAGGTCAGGTTCTATGCTGACCGCATTCCTCCATGAAACCCAAATCGGTCAGTTGTTATTGTTTCCTTATGCAACAGGTGGAGAGGCTAGAATCTCCAAGTTTATTAATGGAGAACTAAAGCTTGATCCAAGGTATAAACGCCCTGACATATATGACCATAAGCCATGTTTTCTAAGAGTTCATCTTCGTCCATTCAAGGAAGGATGTTTTGAAGAGGGTGCAGTTATTTGTGCACCATATCCTTCTGATATATTTTTGTGGACTTCAAGTTCAGAGAAAAATGAAGAGGGACTTCAAATGTCTCAGTCTGCTATGCGCTTATACTTCAAAGAACAGTCCTCTGGTAGATGGGAAATGCAGATACCAGATGATTCAATTGCTAGCAAATCTCACCGGTGGCCTATTGGCTTTGTCACAACAGGATCTGTTCAAGGAAGCAAGAGTCTTGTAGCTAAGGGCTTTTGCGAGGCTGTTTTACTATCTCATTTAAGAGAGGAACAGTGGACGGATATGCCTATGAAAAAGAGGAGAGAAATATATGTACTTGTCAGGAATTTGAGATCTACAGCATATAGACTTGCTCTTGCCTCTATCGTTCTTGAATACAAGGAAAATGACGATCGGTTTTTGTGA 2670 0.4079 MVAEGTKRPQISLPILPPPRTINVQKYAESRALELHSLQSIIENRVNSDYRSQRNKRRRTTAFDNQIARKGCRRKRQKVGIVGKALAKSGLEEDELKKLPRRVRRRYELKNNPENGFCTSGDGTKRLRTHVWHAKRFAMTKLWGYHLPLCLQGRALLKRLKEGVLVHDASYYTAVQLEGPESRLSNALFSLKHIEMLAPNNYCGLSAPDSDDLDSLTSVLRSVLEPSPTTTHPENLEDSLISGVTYGSAMMRQDGGLICPPIAPVTYMWQPTSQQNISTRLDEQNHYTSFGQHGISSDSNKHSVELCEKSDKMKHGSSFRHLWVWIHASAFEEGFDNLKIACRKEGQLAKLELFGLGAFQLLQKILHPVGGISENHWQLKKHIVIEEGCVSQNRNSTTLKNGDRFSACAMLPLNVKDPRELPWKRNVVPVEHISTKTLSDASETKCKELAELGGILEENKDLCSLSLSNLEDCQSNVDDLWYATARGLSPPVEDSLLSKEKHHERMVNFCLVDTDSGDASSSTKVQSSRSCPILLLKNDVKELSIGWVKAFWIPLISNGARAIGLQEKHRITCEMGLPVFPSDFPDCKAYSCLMEEKEAAFNKKEELRPPSIRHLRVPIQPPWGIVRLTFDKMISSIKTPDLSTREDLTNSSSLPNPYPGSFKISNSNSWSNSFDGTVVRSGSMLTAFLHETQIGQLLLFPYATGGEARISKFINGELKLDPRYKRPDIYDHKPCFLRVHLRPFKEGCFEEGAVICAPYPSDIFLWTSSSEKNEEGLQMSQSAMRLYFKEQSSGRWEMQIPDDSIASKSHRWPIGFVTTGSVQGSKSLVAKGFCEAVLLSHLREEQWTDMPMKKRREIYVLVRNLRSTAYRLALASIVLEYKENDDRFL 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00770 889 ProSitePatterns Neurotransmitter-gated ion-channels signature. 573 587 IPR018000 -
Vimu5g00770 889 Pfam Ribonucleases P/MRP protein subunit POP1 55 179 IPR009723 -
Vimu5g00770 889 Pfam POPLD (NUC188) domain 546 613 IPR012590 -
Vimu5g00770 889 PANTHER RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1 17 877 IPR039182 GO:0000172|GO:0001682|GO:0005655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00770 K01164 - gmx:100788705 1369.37