Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00560 ATGGCCACACTCTTCGACTCTCTCGCCTTCGTTGGCATCCCTTCCGCCGCCTCTTCCCCCTTCGCCGCTCGCCCCACCTCCGCCAAGCTCCCACACTGCATCGGCCTCAGACTCAGACCAACCGTCGCACGATTCGTGGCAGCCTCCGCTCCCAAAGTTGCCTCACACGCCGCGCGCGTTGTGTGCGAGGCTCAGGATGCCGTCGTCGATGTGGCTCCTATTACCGATGAAAATTGGCAATCCCTTGTACTTGAATCTGATTCTGCTGTTCTGGTTGAATTCTGGGCGCCATGGTGTGGTCCCTGCCGAATGATTCACCCTATAATTGATGAGCTTGCAAAGCAATATACTGGGAAGCTCAAATGTTACAAACTCAACACTGATGAGAGCCCTTCAACTGCAACTCGGTATGGAATTCGAAGCATTCCCACTGTTATGATTTTCAAGAATGGTGAGAAGAAAGATACAGTTATAGGTGCTGTGCCCAAGTCAACGTTGACCACAAGCATAGAAAAATTCGTTTGA 525 0.5181 MATLFDSLAFVGIPSAASSPFAARPTSAKLPHCIGLRLRPTVARFVAASAPKVASHAARVVCEAQDAVVDVAPITDENWQSLVLESDSAVLVEFWAPWCGPCRMIHPIIDELAKQYTGKLKCYKLNTDESPSTATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFV 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00560 174 Gene3D Glutaredoxin 70 174 - -
Vimu5g00560 174 PRINTS Thioredoxin family signature 138 149 - -
Vimu5g00560 174 PRINTS Thioredoxin family signature 98 107 - -
Vimu5g00560 174 PRINTS Thioredoxin family signature 90 98 - -
Vimu5g00560 174 FunFam Thioredoxin 64 174 - -
Vimu5g00560 174 CDD TRX_family 77 171 - -
Vimu5g00560 174 Pfam Thioredoxin 71 171 IPR013766 -
Vimu5g00560 174 PANTHER GEO12009P1 63 173 - -
Vimu5g00560 174 ProSitePatterns Thioredoxin family active site. 91 109 IPR017937 -
Vimu5g00560 174 NCBIfam thioredoxin 75 173 IPR005746 GO:0015035
Vimu5g00560 174 SUPERFAMILY Thioredoxin-like 68 173 IPR036249 -
Vimu5g00560 174 ProSiteProfiles Thioredoxin domain profile. 51 174 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00560 Vimu-Chr5 6019973 6022486 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00560 K03671 - gmx:100818054 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00560 5 6019973 6022486 Vimu5g00560 5 6019973 6022486 ECH