Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00465 ATGGCACCTCAAAGATTAGCTTTGATCATACTTCTCGTATCCCTCACCTTCTCTTCTTCACGCTCTGACAATGGTGGCATTGCTGTTTACTGGGGCCAAGACGCTCGAGAAGGCGAATTGATAACCACATGTAACAGTGGAAAGTACGCCATTGTGCTCCTCGCTTTCCTCAACCAGTTCGGTTCAGGGACAACGCCAGCTGTGAACTTCGCCGGTCACTGCGGCGATGGTTCATGGAGAAGTTGCGCCGATCTACAGCCCCAAATTAGTTACTGCCAGAACAAAGGCATCAAGGTGCTCCTTTCAATTGGAGGAGCCACTGGAGGGTACTGGCTGAGCTCGGCGGAGGACGCAAAGATCGTGGCCAACTACCTCTTCACCAACTTCCTCAGCGGCGAATACGGTCCACTTGGAAGCGTCATGCTGGACGGCATCGACTTCGACATCGAAAATTCGGAGAATTACTGGGACGATCTTGCAAGGGAACTCGATTTCTTACGGCAAACGACGGGGCGTTACTTTTACTTGTCCGCAGCTCCTCAGTGCCCAACAGACCCAATCAACTATCTCGACAAAGCCATCGCCACCAAACTCTTCGATTACATCTTCGTTCAGTTCTACAATAACCCTAGTTGCTCCTACACCGGTGGCGCCAACGCCCTCTTGGAGTCCTGGGACAAGTGGGTCGACTTGGTCGCCTCCAACAACTCGCTCTTCTTGGGAGTGCTAGCAGCGTCCACCGCTGGCGACGGTTACATTCCGCCGGAGGTCCTCATCGACGAGGTGCTTCCGCACGTGAAGGAAGCCTCCAACTACGGGGGAGTGATGCTGTGGGATAGATACCACGATGTTCAGAATGGCTACAGTGATAGCATACAATCCAATGTGATTAAGTCCAAGTTGCAGGTGTCTGTGGCGTCCGTTTCCGACGCAATTTACCGGAGCGTGTCCAAGGCCTTGGGCCGCGTTTTAGCTTACTAG 981 0.5301 MAPQRLALIILLVSLTFSSSRSDNGGIAVYWGQDAREGELITTCNSGKYAIVLLAFLNQFGSGTTPAVNFAGHCGDGSWRSCADLQPQISYCQNKGIKVLLSIGGATGGYWLSSAEDAKIVANYLFTNFLSGEYGPLGSVMLDGIDFDIENSENYWDDLARELDFLRQTTGRYFYLSAAPQCPTDPINYLDKAIATKLFDYIFVQFYNNPSCSYTGGANALLESWDKWVDLVASNNSLFLGVLAASTAGDGYIPPEVLIDEVLPHVKEASNYGGVMLWDRYHDVQNGYSDSIQSNVIKSKLQVSVASVSDAIYRSVSKALGRVLAY 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00465 326 FunFam Acidic endochitinase SE2 25 296 - -
Vimu5g00465 326 CDD GH18_hevamine_XipI_class_III 25 292 IPR045321 -
Vimu5g00465 326 PANTHER ENDOCHITINASE 8 294 - -
Vimu5g00465 326 Gene3D Glycosidases 22 311 - -
Vimu5g00465 326 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 25 303 IPR001223 GO:0005975
Vimu5g00465 326 Pfam Glycosyl hydrolases family 18 27 280 IPR001223 GO:0005975
Vimu5g00465 326 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 142 150 IPR001579 GO:0004553|GO:0005975
Vimu5g00465 326 SUPERFAMILY (Trans)glycosidases 22 292 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00465 Vimu-Chr5 4594316 4595419 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00465 4 296 Glycoside Hydrolase AT5G24090 47.492 3.27e-92 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00465 K01183 - gmx:547449 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00465 5 4594316 4595419 Vimu5g00465 5 4594316 4595419 ECH