Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00464 ATGGCGTCTCAAAGACTAGCTTTGATCACACTTCTCTTAACCCTTTCCGCTCTCTCTTCCTCACGCGCTGACAAAGGTGGCATCGCCGTGTACTGGGGACAAAACCTTAACGAAGGCACATTGACAAGCACATGTGACACTGGTAACTATGAAATTGTGCTCCTCGCTTTCCTCACCCAGTTCGGTGCAGGGAGAACCCCAGCTTGGAACTTCGCCGGTCACTGCGACAATGGTGCCTGGAAACATTGCACTGAATTAGAGTCCGAAATAAAATACTGCCAGGGGAAAGGCATCAAAGTGCTCCTTTCAATTGGAGGAGACAGTCCGAACTACTCACTAAGCTCGCCGGAGGATGCAAAGGAGGTGGCCAACTACATCTACACCAACTTCCTAAGCGGCAATTATGGTCCAGTGGGAAGCGTCACGCTGGACGGCGTCGACTTCGACATCGAAAGGACGGAGGATTACTGGGACAACCTTGCCAGGGAACTCGACTACTTCCGACAAACGACAGGGCGTTACTTTTACTTGTCGGCAGCCCCTCAGTGCCCTACAGACCCAATCTACTATCTCGGCAAAGCCATCGCCACCGAACTCTTCGATTACATCTTCGTTCAGTTCTACAACAACCCTAGTTGCTCCATCGCAAGTGGCATCCCCGCTATCTTGAACTCCTGGGACAGGTGGGTGAGTTTGGTCGCCTCCAACAACTCGCTCTTCGTGGGCGTGCCAGCAGCGCCCAGCGCCGGCGCTGGTTATATTTCGCCGGAGGAACTCAACAGCCAGGTGCTTCCGCACGCGAAGCAAGCCCCCAACTATGGGGGAGTGATGCTTTGGGATAGATACCGCGATCTTCAGAGCGGTTACAGTAATAGCATACTGCCCAATGTGATTAAATCTAAGTTGCAGGTGTCTGTGGCGTCCGTTTCCGACGCAATTTACCGGTGCGTGTCTAAGGCGTTGAACCGCGGCTTAGATTACTAG 984 0.5285 MASQRLALITLLLTLSALSSSRADKGGIAVYWGQNLNEGTLTSTCDTGNYEIVLLAFLTQFGAGRTPAWNFAGHCDNGAWKHCTELESEIKYCQGKGIKVLLSIGGDSPNYSLSSPEDAKEVANYIYTNFLSGNYGPVGSVTLDGVDFDIERTEDYWDNLARELDYFRQTTGRYFYLSAAPQCPTDPIYYLGKAIATELFDYIFVQFYNNPSCSIASGIPAILNSWDRWVSLVASNNSLFVGVPAAPSAGAGYISPEELNSQVLPHAKQAPNYGGVMLWDRYRDLQSGYSNSILPNVIKSKLQVSVASVSDAIYRCVSKALNRGLDY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00464 327 CDD GH18_hevamine_XipI_class_III 26 295 IPR045321 -
Vimu5g00464 327 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 304 IPR001223 GO:0005975
Vimu5g00464 327 FunFam Acidic endochitinase SE2 26 297 - -
Vimu5g00464 327 SUPERFAMILY (Trans)glycosidases 24 293 IPR017853 -
Vimu5g00464 327 PANTHER ENDOCHITINASE 8 293 - -
Vimu5g00464 327 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 143 151 IPR001579 GO:0004553|GO:0005975
Vimu5g00464 327 Gene3D Glycosidases 24 312 - -
Vimu5g00464 327 Pfam Glycosyl hydrolases family 18 28 284 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00464 Vimu-Chr5 4569284 4570845 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00464 4 297 Glycoside Hydrolase AT5G24090 48.161 3.38e-93 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00464 K01183 - gmx:547449 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00464 5 4569284 4570845 Vimu3g02966 3 43757647 43759394 ECH
Vimu5g00464 5 4569284 4570845 Vimu5g00464 5 4569284 4570845 ECH