Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00457 ATGGCTTGCCTCAAACAACTTTCAGTCCTGTTACTTCCTCTGTTGCTCATTTCCTTCTTCAAACCCTCCCACGCCGGAGGAATTTCCGTCTACTGGGGTCAAAACGGCAACGAGGGCTCCCTGGCCGACGCATGTAACACCGGCAACTATCAATACGTCAACATAGCATTCTTGTCCACGTTCGGCGGCGGCCAGACCCCGCAACTCAACCTTGCCGGCCACTGCAACCCCTCTATCAACAACTGCAACGTGTTCAGCGACCAGATCAAAGACTGCCAGAGAAAAGGCATCAAAGTGCTCCTGTCACTAGGCGGCGCCAGTGGCAGCTACTCCCTCAGCTCCGCCGATGACGCAACACAGGTTTCCAACTATATCTGGGACAACTTTCTCGGCGGTCAGTCGAGCTCCCGTCCTCTGGGCGACGCCACCTTAGACGGTGTCGATTTCGACATCGAATCAGGCAACGGCCAGTATTGGGATGATCTGGCAAGAGCCCTAAAAGGGCATAATTCACAGTTGCTCTTGACTGCTGCACCGCAGTGTCCGATCCCTGATGCTCACTTGGATACTGCCATCAAAACTGGGCTCTTTGACATTGTGTGGGTGCAATTCTACAACAACCCTCCTTGCCAGTATTCGAGTGGCAACACCAACGACCTCATCAGTTCTTGGAACCAGTGGACCTCAAGCCAGGCGAAGCAGTTGTTTTTGGGAGTGCCAGCTTCTACAGCAGCTGCTGGAAGTGGGTTTATTCCTGCTGATGTGTTAACTTCTCAGGTTCTTCCTACCATCAAGGGTTCTTCCAAGTATGGGGGAGTCATGCTGTGGGACAGATTCAATGACGGTCAAAGCAAATACAGTGATGCTATCAAAGGAAGTGTTTAG 885 0.522 MACLKQLSVLLLPLLLISFFKPSHAGGISVYWGQNGNEGSLADACNTGNYQYVNIAFLSTFGGGQTPQLNLAGHCNPSINNCNVFSDQIKDCQRKGIKVLLSLGGASGSYSLSSADDATQVSNYIWDNFLGGQSSSRPLGDATLDGVDFDIESGNGQYWDDLARALKGHNSQLLLTAAPQCPIPDAHLDTAIKTGLFDIVWVQFYNNPPCQYSSGNTNDLISSWNQWTSSQAKQLFLGVPASTAAAGSGFIPADVLTSQVLPTIKGSSKYGGVMLWDRFNDGQSKYSDAIKGSV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00457 294 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Vimu5g00457 294 PANTHER ENDOCHITINASE 11 291 - -
Vimu5g00457 294 Gene3D Glycosidases 26 294 - -
Vimu5g00457 294 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 294 IPR001223 GO:0005975
Vimu5g00457 294 Pfam Glycosyl hydrolases family 18 29 280 IPR001223 GO:0005975
Vimu5g00457 294 CDD GH18_hevamine_XipI_class_III 26 292 IPR045321 -
Vimu5g00457 294 FunFam Acidic endochitinase SE2 26 294 - -
Vimu5g00457 294 SUPERFAMILY (Trans)glycosidases 22 289 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00457 Vimu-Chr5 4495713 4496597 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00457 4 294 Glycoside Hydrolase AT5G24090 58.923 6.53e-129 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00457 K01183 - gmx:100783329 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00457 5 4495713 4496597 Vimu5g00457 5 4495713 4496597 ECH