Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00417 ATGGAGGAAGACAAGTACGCGAAGGAATTGGAGGTGGCCGTGAGGGTGGTCCACGTGGCGTGTGCTCTGTGCGGGAGGGTGCAGGAGAGGCTCCTTGAGACCAGCAATGATCACGTTGTGTCCAAGGATGATGATTCTCCTGTTACTGTTGCAGAAATATTTGGAGTTCAAAACGTATCAATTGTGGCCGAAGAAGACATACAAACCATCTCAAAGGATGAATCAGCAAGCTTGCTGGATAGTGTTGTGAACACTGTGAATGAGTCTTTAGCTTTTGCATCCAAGTATGGTCTTCAAAGTCCAGAGACAACTCTAGGATCAACTGAAGTTCTTGAGGCCATTTCCCGTTGCAACTCAACTGGAGGCCCCAGTGGAAGATATTGGGTACTTGATCCTGTTGATGGCACATTAGGATTTGTACGTGGGGATCAGTATGCTGTTGCTCTAGCTCTCATTGAGGATGGAAAAGTTGTTCTTGGAGTTCTTGGTTGTCCTAACTACCCAGTGAAGACAGAATGGCTTAATTATCATTACCAGCATCACCAAACAATGGCGCAATCGTCTCAAATAACTCCTGATACTGGAGGAAAAGGATGCGTATTGTACGCAAAAAGCGGCAGTGGTGAGGCTTGGTTGCAGTCATTGATTGATGGAGAGAAAATGCTGGAATGGCCAAATCGTGCTAGACTTATTCGTGTTTCTGCAATTGATGATCCGGCATTGGCAACTCTCTGTGAACCAGTGGAAAGGGCAAACTCAAACCACTCATTCACAGCTGGACTTGCTCACAGTGTGGGACTTAGAAAACAGCCCTTGCGTGTGCACAGCATGGTAAAATATGCAGCAATAGCACGGGGCGATGCAGAGATATTCATGAAATTTGCCAAGTGTGGATACAAGGAGAAGATATGGGATCATGCTGCTGGTGTTGTGATTGTTGAAGAGGCTGGTGGTGTGGTAACTGATGCTGGAGGTCGCCCTCTGGACTTTTCCAAGGGAATGTACTTAGAAGGTCTTGACAGAGGTATAATTGCATGCTCTGGTGTAACACTGCATGAAAAATTTATTGCTGCTGTTTATGCAAGCTGGGACTCCTCAAATTTATGA 1107 0.4598 MEEDKYAKELEVAVRVVHVACALCGRVQERLLETSNDHVVSKDDDSPVTVAEIFGVQNVSIVAEEDIQTISKDESASLLDSVVNTVNESLAFASKYGLQSPETTLGSTEVLEAISRCNSTGGPSGRYWVLDPVDGTLGFVRGDQYAVALALIEDGKVVLGVLGCPNYPVKTEWLNYHYQHHQTMAQSSQITPDTGGKGCVLYAKSGSGEAWLQSLIDGEKMLEWPNRARLIRVSAIDDPALATLCEPVERANSNHSFTAGLAHSVGLRKQPLRVHSMVKYAAIARGDAEIFMKFAKCGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSKGMYLEGLDRGIIACSGVTLHEKFIAAVYASWDSSNL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00417 368 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 6 367 IPR006239 GO:0006790|GO:0008441
Vimu5g00417 368 CDD PAP_phosphatase 9 361 - -
Vimu5g00417 368 ProSitePatterns Inositol monophosphatase family signature 2. 304 318 IPR020550 GO:0046854
Vimu5g00417 368 Gene3D - 4 222 - -
Vimu5g00417 368 PANTHER PHOSPHATASE 2 366 - -
Vimu5g00417 368 Pfam Inositol monophosphatase family 65 363 IPR000760 -
Vimu5g00417 368 SUPERFAMILY Carbohydrate phosphatase 6 361 - -
Vimu5g00417 368 Gene3D - 232 362 - -
Vimu5g00417 368 FunFam PAP-specific phosphatase HAL2-like 232 365 - -
Vimu5g00417 368 ProSitePatterns Inositol monophosphatase family signature 1. 128 141 IPR020583 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00417 Vimu-Chr5 3962062 3969448 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00417 K01082 - gmx:100806320 673.315