Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00390 TTGCACTTTCCCGAAAACCAATACACCACTCTCGTCGCCGCCGCCGTCGTCGACCATCGCAAGCGCTGTCGCACTCCGCCGTCATCCGTTAGGGTTAAGATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATCACTATTTTCTCTCCCGAGGGACGTCTCTTTCAAGTTGAGTATGCTTTCAAGGCTGTTAAGGCTGCTGGAATAACCTCAATCGGTGTCCGAGGAAAGGATTCCATTTGTGTTGTTACTCAGAAGAAGGTTCCGGATAAGCTTTTGGACCAGACAAGTGTTACACACCTCTTTCCCATTACAAAGTACCTTGGTTTGTTGGCGACTGGCATGACAGCTGATGCTAGGACACTGGTCCAACAAGCAAGAAATGAAGCAGCTGAGTTTCGCTTTACATATGGATATGAGATGCCTGTAGATGTGTTGGCTAGATGGATTGCAGACAAATCACAAGTCTATACCCAACATGCATATATGAGACCACTTGGAGTAGTTGCTATGGTTTTGGGTATAGATGACGAATATGGACCACAGCTTTACAAATGTGATCCTGCTGGTCATTACTTTGGTCACAAGGCCACAAGTGCTGGACTGAAGGACCAAGAGGCAATTAATTTCTTGGAAAAGAAGATGAAGAATGACCCTTCATTTACTTATGAGGAGACGGTGCAGACTGCCATTTCTGCTCTCCAATCAGTTCTTCAGGAGGATTTTAAGGCCACTGAGATTGAGGTTGGAGTGGTACGAAAGGATAATCCAGAATTCAGAGTTCTAACCACTGAGGAAATTGATGAGCACTTGACTGCAATAAGTGAGCGTGACTGA 840 0.4607 MHFPENQYTTLVAAAVVDHRKRCRTPPSSVRVKMSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKVPDKLLDQTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLARWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVLQEDFKATEIEVGVVRKDNPEFRVLTTEEIDEHLTAISERD 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00390 279 ProSitePatterns Proteasome alpha-type subunits signature. 42 64 IPR000426 GO:0006511|GO:0019773
Vimu5g00390 279 ProSiteProfiles Proteasome alpha-type subunit profile. 57 272 IPR023332 -
Vimu5g00390 279 Pfam Proteasome subunit A N-terminal signature 42 64 IPR000426 GO:0006511|GO:0019773
Vimu5g00390 279 Pfam Proteasome subunit 69 253 IPR001353 GO:0005839|GO:0051603
Vimu5g00390 279 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 34 279 IPR029055 -
Vimu5g00390 279 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 46 274 - -
Vimu5g00390 279 CDD proteasome_alpha_type_6 41 253 IPR034642 GO:0019773
Vimu5g00390 279 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 41 278 IPR029055 -
Vimu5g00390 279 SMART Proteasome_A_N_2 42 64 IPR000426 GO:0006511|GO:0019773
Vimu5g00390 279 FunFam Proteasome subunit alpha type 34 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00390 Vimu-Chr5 3616539 3622859 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00390 K02730 - gmx:732640 488.034