Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00374 ATGCCTGAGGCACCAAGGGACTACAACCTTGTTGAGCAAAACGAGAAAATTCTCGACTTCATTGAGGATGTCACCGCCAACGCCGACCAAGTTCAGAAGAGGGTCCTCTCCGAAATCCTCTCCAGCAATGCAAACGTTGAGTACTTGAAGAGACACGGTCTCCACGGCCAGACAGACCGTGAAACTTTCAAGAAACTCTTGCCTGTCATAACCTACGAGGATATCCAACCTGACATCAACCGCATCGCCAATGGTGACACTTCTCCAATCCTTTGCTCCAAACCCATCTCAGAATTTCTCACTAGGTATGGTGCACGCACATATATATATATATATATATATATATATATATATTGTCATACACAACCTTCCTTCTCTTTTTGGCCTACTTCCAACTTTCTCTTCGTATACACTACAACCAACACCTATGCCGATCCTAGTGGACTGGTCTAG 453 0.4459 MPEAPRDYNLVEQNEKILDFIEDVTANADQVQKRVLSEILSSNANVEYLKRHGLHGQTDRETFKKLLPVITYEDIQPDINRIANGDTSPILCSKPISEFLTRYGARTYIYIYIYIYIYCHTQPSFSFWPTSNFLFVYTTTNTYADPSGLV 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00374 150 Pfam GH3 auxin-responsive promoter 21 101 IPR004993 -
Vimu5g00374 150 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 14 102 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00374 Vimu-Chr5 3463128 3463580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00374 9 104 EF-hand Containing Proteins AT1G23160 42.708 6.50e-21 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00374 K14487 - gmx:100791987 194.512