Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00364 ATGAGTGATGGAGAGACTTTGGTGTCAAATGATGGAAAGTATGAACTTGGGTTCTTCAGCCCAGGTAATTCTATTAAACGTTATCTGGGTCTTTGGTACAAGAATATCCCAGTTCAGAAAGTCGTTTGGGTTGCTAATAGGGCCAACCCCATCAATGATTCCACAGGTATCTTAACACTCAACACCACTGGCTATCTTGTTCTTACACAAAATGGGTTTCTTGTTTGGTGTACTGACTCTCACAAACAAGCACAGAATCCGGTGGCAGAACTCTTGGAAAGTGGGAATCTAGTGATAAGAAATAAGGGAGAAACAAAGAAAGAAGAATATTTATGGCAAAGCTTTGACTATCCATCTGATACACTCTTGCCAGGGATGAAGTTAGGATGGGACCTCCGAACTGGTTTTGAATGGAAATATACAGCATGGAGGAGTCAAGATGATCCATCCCCAGGAGACTTTTCTAGGGTTTTAAAACTCTATAACTATCCAGAGATTTATATAATGAATGGAACACAAAAATGGTTCAGGTTTGGACCTTGGAACGGCCTATATTTCAGTGGAACACCAAGTCTATTTAACAACACCGTTTTCTATTTCAATATGGTCATCAATATGAATGAGATTTACTACTCATATAGCCTTACAAACAGTGAAACCATCTCATTTACAGTAACAAACGAAACGGGTGAAGCGTATCGCTATGTGTGGAGTGAGGATGATCACAATTGGAGGACGATCGGATACTTCCCGAGTGAGTTTTGTGACACTTACGGGCTCTGTGGACCCTATGGGAACTGCCTGAGAACCCAAACCCAAGTCTGTCAATGTTTGAAAGGTTTCAAACCAAAGGCGCCAAAAAAATGGAACTTGTCTGATTGGCGTGGAGGTTGTGTCCGTAATGAAGCGTTGAGTTGCAGAGGTAAAGACGAAGATGGGTTTAACAAATTTGAAGGGCTGAAAGTTCCGGATACTACACAAACTTGGTTGGATGTGAGTATCGGTCTTGAGGAATGCAGCGTGAAGTGTTTGAGTAATTGTTCTTGCATGGCTTATGCTAATTCAGACATAAGAGGTGCAGGCAGTGGATGTGTCATGTGGTTCGGAGATCTCATTGATATCAAACAGTTTGAAACTGGAGGACAAGATCTATATATCAGGATGCCTGCTTCAGAGTTAGAACATGTTTATAGCCACGATAAGATCAAAACGCTTCCAATAGTTGTTTCCACGGTTGCAGCAAATCCGCAGGAACAAATCTGGTAA 1266 0.4155 MSDGETLVSNDGKYELGFFSPGNSIKRYLGLWYKNIPVQKVVWVANRANPINDSTGILTLNTTGYLVLTQNGFLVWCTDSHKQAQNPVAELLESGNLVIRNKGETKKEEYLWQSFDYPSDTLLPGMKLGWDLRTGFEWKYTAWRSQDDPSPGDFSRVLKLYNYPEIYIMNGTQKWFRFGPWNGLYFSGTPSLFNNTVFYFNMVINMNEIYYSYSLTNSETISFTVTNETGEAYRYVWSEDDHNWRTIGYFPSEFCDTYGLCGPYGNCLRTQTQVCQCLKGFKPKAPKKWNLSDWRGGCVRNEALSCRGKDEDGFNKFEGLKVPDTTQTWLDVSIGLEECSVKCLSNCSCMAYANSDIRGAGSGCVMWFGDLIDIKQFETGGQDLYIRMPASELEHVYSHDKIKTLPIVVSTVAANPQEQIW 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00364 421 Gene3D - 1 115 IPR036426 -
Vimu5g00364 421 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 115 - -
Vimu5g00364 421 CDD PAN_AP_plant 304 389 - -
Vimu5g00364 421 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 4 413 - -
Vimu5g00364 421 Pfam S-locus glycoprotein domain 176 284 IPR000858 GO:0048544
Vimu5g00364 421 Pfam D-mannose binding lectin 41 144 IPR001480 -
Vimu5g00364 421 PIRSF SLG 2 404 IPR035446 -
Vimu5g00364 421 Pfam PAN-like domain 306 374 IPR003609 -
Vimu5g00364 421 ProSiteProfiles PAN/Apple domain profile. 306 389 IPR003609 -
Vimu5g00364 421 SUPERFAMILY alpha-D-mannose-specific plant lectins 41 149 IPR036426 -
Vimu5g00364 421 SMART ntp_6 309 388 IPR003609 -
Vimu5g00364 421 ProSiteProfiles Bulb-type lectin domain profile. 1 112 IPR001480 -
Vimu5g00364 421 CDD B_lectin 2 118 IPR001480 -
Vimu5g00364 421 SMART blect_4 2 118 IPR001480 -
Vimu5g00364 421 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 305 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00364 Vimu-Chr5 3280513 3282105 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00364 - - vun:114170241 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00364 5 3280513 3282105 Vimu5g00364 5 3280513 3282105 ECH