Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01944 ATGAGGAAGTTGGTTGACATGGCTACGCATACACCAAAAAATATCCTCATTACTGGAGCTGCTGGATTCATTGCATCTCATGTTGCCAACCGGCTTATCAGGAGTTATCCCCAGTACAAAATTGTTGTTCTTGACAAGCTTGATTACTGTTCAAATCTGAAGAACCTCACTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGAGATATTGGAAGTGCTGATCTTGTCAACTACCTACTAATTACCGAGTCCATTGACACAATAATGCACTTTGCTGCTCAAACCCATGTTGACAACTCGTTTGGCAACAGCTTTGAGTTCACCAAGAACAACATATATGGAACTCATGTCCTTTTAGAAGCCTGCAAGGTAACTGGCCAGATAAAGAGGTTCATCCATGTGAGCACTGATGAGGTCTATGGAGAGACAGATGAGGATGCTGTTGTTGGAAACCACGAGGCTTCTCAATTACTTCCCACAAATCCTTACTCTGCAACAAAAGCTGGGGCAGAAATGCTTGTCATGGCATATGGCAGGTCATATGGGTTACCTGTTATCACAACACGTGGGAACAATGTTTATGGGCCAAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATTCTCCTGGCCATGCAAGGCAAGCCTCTTCCAATCCATGGGGATGGTTCTAATGTAAGGAGTTATTTATATTGTGAAGATGTTGCAGAGGCTTTTGAACTTATCCTTCACAAGGGAGAGGTTGGGCATGTTTACAATATTGGTACTAAGAAGGAGAGGAGAGTTATTGATGTTGCCAAAGATATATGCAGGCTTTTTAAGATGGACTCAGAGACTAGTATAAAATTTGTGGAGAACAGACCATTTAATGACCAGAGATACTTTCTTGATGATGAAAAGCTGAAGGTCTTGGGTTGGTCTGAGAGGACAACTTGGGAAGAGGGCTTGAAGAAAACCATGGACTGGTATATCAACAATCCTGATTGGTGGGGTGATGTCAGTGGTGCATTGCTTCCTCATCCAAGGATGCTGATGATGCCAGGTGGATTGGAGAGACACTTTGATGGATCTGATGAAGAGAAAAAACCTGCATCATATGTCTCAACTAATACTCGAATGGTGGTTCCAACAACCAAGAATGTTAGCTCTTCTCAGAAGCCTCCTCTGAAGTTCTTGATCTATGGAAGAACAGGTTGGATTGGGGGTTTGCTGGGGAAATTGTGTGAAAAACAAGGGATTTCCTATGAATATGGAAGAGGGCGCCTAGAGGATCGTCAATCACTTGTGGCTGATATTCAGAATCTGAAGCCTACTCACATTTTTAATGCTGCAGGAGTGACTGGCAGACCCAATGTTGATTGGTGTGAATCTCATAAAACAGAAACCATCCGCACCAACGTTGCTGGGACTTTAACGTTGGCTGATGTCAGCAAAGAGCATGGAATCTTGATGATAAATTATGCTACTGGATGCATATTTGAATACGATGAAGCTCATCCAGAGGGTTCTGGCATTGGCTTTAAGGAGGAAGACAAACCCAATTTCATCGGTTCTTTCTATTCCAAAACCAAAGCTATGGTAAGCTCACTTATGTTATTGCCTCATTCTCTTTCGGTTATTCTTACAATTATGTCTTATAATTTGGATGTGAATATTTGTCAGGTTGAAGAGCTCTTGAAGGAATATGACAATGTGTGCACCCTCAGGGTTCGCATGCCAATTTCATCCGACTTGAGTAATCCACGTAACTTCATCACCAAGATTTCTCGTTATAACAAAGTGGTCAACATTCCAAACAGCATGACCGTTTTGGATGAACTTCTGCCTATTTCGATTGAGATGGCGAAGCGAAACTTGAGGGGCATCTGGAACTTCACAAATCCTGGGGCAGTGAGCCACAACGAGATTCTTGAGATGTACAGGGATTACATTGATCCAAGCTTCAAGTGGGTCAACTTCAACCTTGAAGAGCAAGCCAAGGTGATCGTAGCTCCACGGAGCAACAATGAGATGGATGGAACCAAATTGAAGAAAGAGTTCCCTGAGCTTCTTTCCATCAAGGAATCGCTGATCAAGTATGTCTTTGTGCCAAACAAGAAAACTGCTTAA 2115 0.4246 MRKLVDMATHTPKNILITGAAGFIASHVANRLIRSYPQYKIVVLDKLDYCSNLKNLTPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFELILHKGEVGHVYNIGTKKERRVIDVAKDICRLFKMDSETSIKFVENRPFNDQRYFLDDEKLKVLGWSERTTWEEGLKKTMDWYINNPDWWGDVSGALLPHPRMLMMPGGLERHFDGSDEEKKPASYVSTNTRMVVPTTKNVSSSQKPPLKFLIYGRTGWIGGLLGKLCEKQGISYEYGRGRLEDRQSLVADIQNLKPTHIFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVSKEHGILMINYATGCIFEYDEAHPEGSGIGFKEEDKPNFIGSFYSKTKAMVSSLMLLPHSLSVILTIMSYNLDVNICQVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPSFKWVNFNLEEQAKVIVAPRSNNEMDGTKLKKEFPELLSIKESLIKYVFVPNKKTA 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01944 704 CDD dTDP_GD_SDR_e 13 330 IPR005888 GO:0008460|GO:0009225
Vimu4g01944 704 Gene3D - 381 704 - -
Vimu4g01944 704 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 386 693 IPR036291 -
Vimu4g01944 704 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 544 704 - -
Vimu4g01944 704 Gene3D - 206 328 - -
Vimu4g01944 704 FunFam UDP-glucose 4,6-dehydratase 15 215 - -
Vimu4g01944 704 Pfam RmlD substrate binding domain 392 527 IPR029903 -
Vimu4g01944 704 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 9 344 - -
Vimu4g01944 704 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 338 IPR036291 -
Vimu4g01944 704 Gene3D - 15 319 - -
Vimu4g01944 704 NCBIfam dTDP-glucose 4,6-dehydratase 14 334 IPR005888 GO:0008460|GO:0009225
Vimu4g01944 704 CDD dTDP_HR_like_SDR_e 392 692 - -
Vimu4g01944 704 Pfam GDP-mannose 4,6 dehydratase 16 321 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01944 Vimu-Chr4 21572452 21575538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01944 1 327 Miscellaneous Gene Families AT4G00110 26.648 2.74e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01944 K12450 - gmx:100775641 1308.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01944 4 21572452 21575538 Vimu4g01944 4 21572452 21575538 ECH