Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01879 ATGGCGGGTTACAGAGCCGACGACGACTACGACTACCTCTTCAAGGTTGTCCTCATCGGCGACTCCGGCGTCGGCAAGTCCAACCTCCTTTCTCGTTTCACCAAGAACGAGTTCAACTTGGAGTCCAAGTCCACCATTGGGGTCGAGTTCGCCACTCGCACCTTGAACGTCGATTCCAAAGTCATCAAGGCCCAGATCTGGGACACCGCAGGCCAAGAAAGGTTTTGCCCCTTCTATATCTCCTTCCCCTTCTCACAATGCAAGATCATGCTTAACACACTAATGGGTACACCGGTTTCAATTCAAAAACCCTACTTTTTAATGGTCAACAATTATGGGAAAAAAGTGGTTTTTCAAGGGTTGGTTTACTTGGCTGGATCTAGTTTTGCCCATGCACAACTGGGTTTTTGTTGTGAAGTGAAGTGTAATTGGGTGGATCGTGATCTAGTGTGGAAGCTCGCTTTAACTTTTATAATGTGA 480 0.4708 MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSKVIKAQIWDTAGQERFCPFYISFPFSQCKIMLNTLMGTPVSIQKPYFLMVNNYGKKVVFQGLVYLAGSSFAHAQLGFCCEVKCNWVDRDLVWKLALTFIM 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01879 159 FunFam ras-related protein Rab-39B-like isoform X2 3 80 - -
Vimu4g01879 159 PRINTS Transforming protein P21 ras signature 37 53 - -
Vimu4g01879 159 PRINTS Transforming protein P21 ras signature 55 77 - -
Vimu4g01879 159 PRINTS Transforming protein P21 ras signature 14 35 - -
Vimu4g01879 159 ProSiteProfiles small GTPase Rab1 family profile. 9 159 - -
Vimu4g01879 159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 80 IPR027417 -
Vimu4g01879 159 SMART rab_sub_5 14 128 - -
Vimu4g01879 159 Gene3D - 3 91 IPR027417 -
Vimu4g01879 159 Pfam Ras family 15 77 IPR001806 GO:0003924|GO:0005525
Vimu4g01879 159 NCBIfam small GTP-binding protein domain 12 75 IPR005225 GO:0005525
Vimu4g01879 159 PANTHER DRAB11-RELATED 7 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01879 Vimu-Chr4 20604565 20605044 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01879 K07904 - gmx:547654 150.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01879 4 20604565 20605044 Vimu4g01879 4 20604565 20605044 ECH