Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01871 ATGGCAAAGGGAACAAGCTCAAAACTGAACATCGCAATAATTCACCCGGATCTTGGCATAGGTGGAGCTGAGAGATTGATTGTGGATGCTGCTGTTGAGCTTGCATCCCAGGGCCATAAAGTTCATGTTTTTACTGCACATCATGACAAAAGTAGATGCTTTGAAGAAACTGTTGCTGGTACCTTTCCAGTCACTGTGTATGGTTCATTTCTTCCTCGTCATGTGTTCTACCGTCTTCATGCGTTGTGTGCATACCTTCGGTGCCTATTTGTTGCTCTCTGTGTACTTTTCATGTGGCATTCATTCGATGTTGTACTGGCAGATCAAGTCTCTGTAGTTATTCCTATTTTGAAACTCAAAAGGTCAATAAAGGTTGTATTCTACTGTCATTTTCCGGACTTGTTGCTGGCTCAACATTCAACTTTCATTAGGAGGATGTATAGAAAACCAATTGACTATGTAGAAGAAATAACGACTGGAATGGCTGATTTGATACTTGTTAACAGCAACTTCACTGCCTCTACTTTTGCAAATACTTTTAAGTCTCTAGATGCTAAAGGAATTCGACCAGCTGTTCTATATCCAGCTGTCAATGTGGATCAGTTCAAAGAACCCAATTCCTTTAAGCTGAATTATCTTTCCATCAATCGATTTGAAAGGAAGAAGAACATACAGTTAGCTATTTCAGCTTTTGCTATGCTTCACTCACCCGAAGGAAATGTTCAGCACAAAGATATTACTAATGCTTCTTTGACTATTGCTGGTGAGCCTGATTTTGTTTACGGCTGTGTTTTTTCTGATGATAGATGTTATGGTGATGTTATGTGCATTACTAATTGTAATGGGGGACTTTGTTATTGTGCTGAATCTGGTCAATCTTGCAGAGTGTATGCAAATTATTTAGTGCGACTTTGTGACACATCCATTTCTGTAACAGGCGGCTTTGATAAACGGTTGAAGGAGAATGTGGAGTACTTGGAAGAGCTTAAAGATTTAGCAGAAAAGAAAGGAGTCTCTAGTAAAATAAGATTCGTCACTTCTTGCCCTACTGATGAAAGAAATGCACTTCTTTCAGAATGTCTATGCGTTCTTTACACACCAAAGGATGAGCACTTTGGCATTGTTCCTCTGGAGGCAATGGCAGCTTATAAACCTGTTATTGCATGCAACAGTGGTGGCCCTGTGGAGTCAATTAAGAATGGTGTAACGGGATTCCTTTGTGATCCTACACCTCAAGTGTTTTCTTCAGCAATGGCTAAACTCATAAATGATCCTCAGGGAGCAGAGAAAATGGGCAGAGAAGCTAGGAGGCATGTTGTTCAGTCATTCTCTACAAAGTCATTTGGCCAGCATCTAAATAGATACCTTGTTGACATTCATCGAGGAAAAGAGGATTGA 1398 0.4013 MAKGTSSKLNIAIIHPDLGIGGAERLIVDAAVELASQGHKVHVFTAHHDKSRCFEETVAGTFPVTVYGSFLPRHVFYRLHALCAYLRCLFVALCVLFMWHSFDVVLADQVSVVIPILKLKRSIKVVFYCHFPDLLLAQHSTFIRRMYRKPIDYVEEITTGMADLILVNSNFTASTFANTFKSLDAKGIRPAVLYPAVNVDQFKEPNSFKLNYLSINRFERKKNIQLAISAFAMLHSPEGNVQHKDITNASLTIAGEPDFVYGCVFSDDRCYGDVMCITNCNGGLCYCAESGQSCRVYANYLVRLCDTSISVTGGFDKRLKENVEYLEELKDLAEKKGVSSKIRFVTSCPTDERNALLSECLCVLYTPKDEHFGIVPLEAMAAYKPVIACNSGGPVESIKNGVTGFLCDPTPQVFSSAMAKLINDPQGAEKMGREARRHVVQSFSTKSFGQHLNRYLVDIHRGKED 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01871 465 CDD GT4_ALG2-like 9 452 - -
Vimu4g01871 465 Pfam Glycosyltransferase Family 4 20 200 IPR028098 -
Vimu4g01871 465 Coils Coil 316 336 - -
Vimu4g01871 465 Gene3D Glycogen Phosphorylase B; 300 443 - -
Vimu4g01871 465 PANTHER ALPHA-1,3/1,6-MANNOSYLTRANSFERASE ALG2 5 460 IPR027054 GO:0004378|GO:0006486
Vimu4g01871 465 FunFam alpha-1,3/1,6-mannosyltransferase ALG2 6 204 - -
Vimu4g01871 465 Gene3D Glycogen Phosphorylase B; 5 214 - -
Vimu4g01871 465 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 10 454 - -
Vimu4g01871 465 Pfam Glycosyl transferases group 1 313 437 IPR001296 GO:0016757
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01871 1 465 Glycosyltransferase AT1G78800 61.670 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01871 K03843 - gmx:100809168 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01871 4 20524666 20527531 Vimu4g01871 4 20524666 20527531 ECH