Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01828 ATGACCATGGCTGCATCTGTCAGTTCCCACCGGTCCATCTTCCTCATCCTGTGGATCGTAATCCTGTGCGGTCACGCTCATGCCCGCTTCTTCTCCCGTGATCCGCTTTCTGATGGCGTCTCCGCCAACACCCGGGAAGGCCTCCTCCGCCTCCCGTCGGCGATCACGGCCGAGTCCTCCTGCGAGCAGACCTATGGCTTCCTACCGTGCACCACCACCGTCATCGGTAACCTGTTCCTCATCCTCATCTATGGCTTCCTCATGTTCAAGGCTGCTACGTTCCTATCTGGCGGAAGCGAGCTCCTGCTCGAGATCTTGGGCCCCGGCATTGTTGGCGGCCTCTTTCTCCCCATCCTCGGTGCACTTCCCGATGCCATGCTCATCCTCGGTAGTAAAGAAACTGCTCAAAGTCAGGTATCTGTTGGAATGGGACTGCTAGCTGGTTCCACTGTGCTGCTTCTTACTATAATATGGGGGACCTGTGTTATTGTTGGCAAGTGTGACATCGAGAATTCAATTGCTATTGATTCACGAGACACAAGAGGATTTCATTTAACTGGTTCTGGTGTTAGTACTGATATCTGGACAAGTTATGCAGCACGGATTATGGTTATATCTGTCCTTCCATTTTTGATCGTTCAATTACCACAAATTCTTAATTCAACATCCGGAAGGCACTTGGCTGTTTTGATAGCCCTCATTGTGTCACTCTGTTTATTGGCTGCTTATTGTTTTTACCAGAAACGTGCGTTGGGAAGGCTGGTGAAAGATAATGGAGAACCTGATAAAGAAGTCATTGAAAAATTGTTTTCAACCATTGATGAAGATCAAGATGGCAGTCTTACTCATAGTGAATTGAGAGCACTGGTTATTGGAATTGAGTTTGAGGAGATTGACCTGGATCATGATGATGCCGTAAAAAGGATCATGAATGATTTTGATACTTCTGGCAACGAACTAGTTGATCGAGTAGAATTTGTTAATGGTGTCAGTAGATGGCTTCAAAGAGCTCAGCGTGCTCGAGTTGCATCTGGTGATGCTGGTCCACACACAATGAAGTTTTTAAGTGATTTTCACACAGAAACAAAAAGGGAACATGATTTGCTGGACGTGGGAGATCAGAGTAACGAAGAACCAGAGGGCGTTGAGAATGCTAAATGGACATCCATCAAAGCTGTTCTGCTTCTGCTACTGGGTACTATTATTGCTGCTGCATTTGCTGATCCTCTTGTTGATGCCGTGGATAACTTTTCTGAGGCTACCAGTATTCCTGCTTTCTTCATTTCCTTCATTGCTCTGCCTTTAGCAACCAATTCAAGTGAAGCAGTGTCGGCAATTATTTTTGCTAGTCGTGATAAGAGGCAAACTGCTTCATTAACTTTTTCTGAGCTATATGGTGCAGTGACAATGAATAATGTGCTTTGCCTATCAGTCTTCTTGGCCTTGGTTTATGTGAGGGGATTGACGTGGGACTTCTCTTCGGAGGTGTTAGTCATTTTGGTGGTTTGCATTGTGGTGGGTGTCTTTGCCAGCTTCCGCACTGTCTTCCCTCTATGGACATCTATACTGGCTATCCTTCTTTACCCCTTCTCCCTGGCATTGGTGTATGTTCTTGATTATGTATTTGGTTGGTCGTAG 1638 0.4615 MTMAASVSSHRSIFLILWIVILCGHAHARFFSRDPLSDGVSANTREGLLRLPSAITAESSCEQTYGFLPCTTTVIGNLFLILIYGFLMFKAATFLSGGSELLLEILGPGIVGGLFLPILGALPDAMLILGSKETAQSQVSVGMGLLAGSTVLLLTIIWGTCVIVGKCDIENSIAIDSRDTRGFHLTGSGVSTDIWTSYAARIMVISVLPFLIVQLPQILNSTSGRHLAVLIALIVSLCLLAAYCFYQKRALGRLVKDNGEPDKEVIEKLFSTIDEDQDGSLTHSELRALVIGIEFEEIDLDHDDAVKRIMNDFDTSGNELVDRVEFVNGVSRWLQRAQRARVASGDAGPHTMKFLSDFHTETKREHDLLDVGDQSNEEPEGVENAKWTSIKAVLLLLLGTIIAAAFADPLVDAVDNFSEATSIPAFFISFIALPLATNSSEAVSAIIFASRDKRQTASLTFSELYGAVTMNNVLCLSVFLALVYVRGLTWDFSSEVLVILVVCIVVGVFASFRTVFPLWTSILAILLYPFSLALVYVLDYVFGWS 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01828 545 ProSitePatterns EF-hand calcium-binding domain. 274 286 IPR018247 -
Vimu4g01828 545 SMART efh_1 305 333 IPR002048 GO:0005509
Vimu4g01828 545 SMART efh_1 265 293 IPR002048 GO:0005509
Vimu4g01828 545 FunFam Sodium/calcium exchanger family protein / calcium-binding EF hand family protein 242 360 - -
Vimu4g01828 545 CDD EFh 266 331 IPR002048 GO:0005509
Vimu4g01828 545 ProSiteProfiles EF-hand calcium-binding domain profile. 261 296 IPR002048 GO:0005509
Vimu4g01828 545 SUPERFAMILY EF-hand 261 469 IPR011992 -
Vimu4g01828 545 Pfam Sodium/calcium exchanger protein 78 246 IPR004837 GO:0016020|GO:0055085
Vimu4g01828 545 Pfam Sodium/calcium exchanger protein 392 536 IPR004837 GO:0016020|GO:0055085
Vimu4g01828 545 ProSiteProfiles EF-hand calcium-binding domain profile. 301 336 IPR002048 GO:0005509
Vimu4g01828 545 FunFam Sodium/calcium exchanger NCL2 381 538 - -
Vimu4g01828 545 Gene3D - 246 355 - -
Vimu4g01828 545 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 64 537 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vimu4g01828 545 Pfam EF-hand domain pair 264 328 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01828 Vimu-Chr4 19938966 19944263 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01828 26 545 EF-hand Containing Proteins AT1G53210 62.148 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01828 - - gmx:100809896 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01828 4 19938966 19944263 Vimu4g01828 4 19938966 19944263 ECH