Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01826 ATGAGAAACATTTCCAAAACACCATACTCTGTATTTGTCCTTTTGTTAGCAACAACAATTAGGGTTCAAGGTCGATATCTGACAGAACTAGTTTCAGATGGTGTTCACAAAGTTCAACACAAGGAAACTTCTTACCTAGTTCTGAAAGGAATTGATGATGAATCCTGTGAGGAGCACTGCAAACAAATGTATGGCTTCTTGCCATGCACAGACAATATTTTTGGCCATCTCTTTCTTATTTTGGTGTATGAGTATTTGCTGTTCCATGGAGAATCATATTTGGCTAAAGGAGGAGAACAAATCTTCAAGATTCTTGGCCCTGGTATCTTTGGTGCTAGTGCTTTTCACATCCTAGCTGCCCTTCCAGAGTCCCTAATTCTTCTTGTTTCAGGACTTGTGAGCAATAGGGAGATAGCAGAAGAATATGGCATGACTGGGATTGGGTTATTGGCTGGATCATCTATTTTGCTTCTAACTGTAGTTTGGGGAAGCTGTGTCATTGTTGGAAGACAACAATTTCAGCATTATTCTTCTGCTTCTAATTCTCACCACAAAACTGTTAAAGCCTTCTTCACTGAAAAGAAGACTGGAATATGTGAAACACGATCATTTAATATTGAGAATATTACAAGATGTTCAGAAGAACACCCTGCAAAGGATCTTCACAAGGAATGGGACTCCAAATGTGAGTGCCATAAGGTGAGATTTCGAAGAACTTCTACTCTGAATGAAAGTTTGACCTGTGACAAGCTATTTATAGGGACAACACTCTGCAGGAGATTATATAGGGAAATTGATCAAGATGGGAGTAGTGGTATATCAGCTTCTGAAGTGAGAGATCTTCTGCTCAAAAACAAAGTTACTGAAACCAATTTTGATGAGGACAAAGAAGTAGAACAGGTGTTACAGATTTTTGACCTGGATGGTGACAAAAGAATAAGCAAAGAGGAATTTGTTAGTGGCTTCACAAAATGGCTTCGTCAAACGCAGCACGCTTTAGAGAAACAGTATTTTTCAAGGAAATCATTGAAAAACATATTTCAGGTTTTTGGTCCATGGATTGAAACCAAAAGAAAAGAACGTGAAGGAAAGAAACAGCTTATATGTGAAATCTTGAAGCATGTTCAGAGTGATGTGGTTGGTAGCCTTCTCACAGTAGATGGAAAACCAGATGAACAAGCTATCAGAGGGTTGTTTGTGAAAATTGATCGTAATAGAGACAACTTCATTTCCCAATCTGAGTTAAGAGATCTAATCATGAACATCAAGTTTGTCAAAGCATCAATGGAAGTGGAAGAAGCAGTAGCTCTTGTCATTGAAGAACTTGACATTAATAACGACAGCATAATTAATGAGGAGGAATTTGTTTCTGGGTTTCAGAAATGGCTTAGCTCAACTTCAGCTCCTGCTCCAGTGTCACATTCTGAGTCTCAAGAAGATATGTATCAGAGCTGGGAAGAGGTTGACATGGTGGTAGAAGAGAAGCGAAGTGAAGCAGTAGTTGATAAAACAACATGGGCATGGTTTAAGGCCATTTCATATGTGGTGCTAGGAATTGCTATGCTATCCATTTTGGCAGAGCCTCTAACAGAAAGTGTGCACAACTTCTCTAACAGTGTAGGACTTCATCCATTCTTCATGTCATTTATTCTAGTCCCCTTAGCCACAAATGCTAGAGAAGCAACTTCAGCAATCAAAGAAGCAAGCCATAAGAAGCCAAGAACCACTTCTCTTGCCATTTCTGAGATTTATGGAGGGGTGTTGATGAACAACATTCTTGGCTTCTTTGCAATCTCAGTTCTGATCTGTGTGGGACAAGTCACTTGGCAATATTCTGCTGAATTGCTGGTTGTTGCTATTGTTTGTTCTATAGCAGGCTTAACTGCAAGTTTTCGCTCCACTTTTCCTCTATGGTCATCATTTTTTGCAATCCTCTTGTACCCATTGTCCTTGGTTTTGGTTTTTGTACTTGACCAGGTTCTTCATTATAAGTAG 1995 0.3925 MRNISKTPYSVFVLLLATTIRVQGRYLTELVSDGVHKVQHKETSYLVLKGIDDESCEEHCKQMYGFLPCTDNIFGHLFLILVYEYLLFHGESYLAKGGEQIFKILGPGIFGASAFHILAALPESLILLVSGLVSNREIAEEYGMTGIGLLAGSSILLLTVVWGSCVIVGRQQFQHYSSASNSHHKTVKAFFTEKKTGICETRSFNIENITRCSEEHPAKDLHKEWDSKCECHKVRFRRTSTLNESLTCDKLFIGTTLCRRLYREIDQDGSSGISASEVRDLLLKNKVTETNFDEDKEVEQVLQIFDLDGDKRISKEEFVSGFTKWLRQTQHALEKQYFSRKSLKNIFQVFGPWIETKRKEREGKKQLICEILKHVQSDVVGSLLTVDGKPDEQAIRGLFVKIDRNRDNFISQSELRDLIMNIKFVKASMEVEEAVALVIEELDINNDSIINEEEFVSGFQKWLSSTSAPAPVSHSESQEDMYQSWEEVDMVVEEKRSEAVVDKTTWAWFKAISYVVLGIAMLSILAEPLTESVHNFSNSVGLHPFFMSFILVPLATNAREATSAIKEASHKKPRTTSLAISEIYGGVLMNNILGFFAISVLICVGQVTWQYSAELLVVAIVCSIAGLTASFRSTFPLWSSFFAILLYPLSLVLVFVLDQVLHYK 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01826 664 ProSiteProfiles EF-hand calcium-binding domain profile. 430 465 IPR002048 GO:0005509
Vimu4g01826 664 CDD EFh 258 323 IPR002048 GO:0005509
Vimu4g01826 664 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
Vimu4g01826 664 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 51 180 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vimu4g01826 664 Gene3D - 324 462 - -
Vimu4g01826 664 CDD EFh 395 460 IPR002048 GO:0005509
Vimu4g01826 664 Gene3D - 255 323 - -
Vimu4g01826 664 ProSiteProfiles EF-hand calcium-binding domain profile. 293 328 IPR002048 GO:0005509
Vimu4g01826 664 SUPERFAMILY EF-hand 259 463 IPR011992 -
Vimu4g01826 664 ProSitePatterns EF-hand calcium-binding domain. 403 415 IPR018247 -
Vimu4g01826 664 Pfam Sodium/calcium exchanger protein 514 655 IPR004837 GO:0016020|GO:0055085
Vimu4g01826 664 ProSitePatterns EF-hand calcium-binding domain. 306 318 IPR018247 -
Vimu4g01826 664 SMART efh_1 297 325 IPR002048 GO:0005509
Vimu4g01826 664 SMART efh_1 434 462 IPR002048 GO:0005509
Vimu4g01826 664 SMART efh_1 394 422 IPR002048 GO:0005509
Vimu4g01826 664 Pfam EF-hand domain pair 259 320 IPR002048 GO:0005509
Vimu4g01826 664 Pfam EF-hand domain pair 393 459 IPR002048 GO:0005509
Vimu4g01826 664 Gene3D - 496 657 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01826 Vimu-Chr4 19904211 19911184 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01826 346 658 EF-hand Containing Proteins AT1G53210 40.308 3.12e-67 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01826 - - pvu:PHAVU_005G068200g 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01826 4 19904211 19911184 Vimu4g01826 4 19904211 19911184 ECH