Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01821 ATGTATCAGACTTTTATAAAGCCATGGATTGAACACGTGAGAAAGGAACGTGAGTTGAAGGAACATCTTATATCTGAAGTCTTAAAGCATGCTCAGAATGATATGGTTGGCAGGCTGCAGAATGATGATGGTACACCTGACAAAACTGCAATCAGAAGGGATAATCACATTTCAAGATCTGAACTGGAAAGAGTAGTAAAGGACATCCACTTTAACAAGTTTGTAGATGCTGAGGAGGCAGTTGCAAAACTTGCACAAGATCTTGATGTCAACCGAGATGATGAAATTAGTGAGACCGAGTTTATTGAAGGTTTTGCAAAATGGATGAACTCAAATTCCAGCCAAGCTGCTAAATCAAAATCTTCATCTCAGGGAAATCATCAAAATCCAACCAATGGCGCTTCTGCTTGGTTGACGGCTATTGGATATGTGGTGTTGGGGGTTACTATGCTGGCTCTTCTTGCAGAACCTTTAATAGCTAGTGTTCAACAATTCTCTGAAGAAGCAGGAATTTCATCGTTTTTCATCTCATTCATTTTAGTCCCCCTGGCTACAAATTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTAGCCATAAGAAGAGCAGCAATACTTCTCAGACAATATACGAGATTTATGGAGCAGTGTTCATGAACAACATTCTGGGCTTTGTGGTGATCTCTATTCTCATATACATTCGTGAGATAACTTGGCAATTCTCAGCTGATGTACTTGTTGTGGCAATAGTTTGTACAGTAATGGGCCTCGCTGCTACTTTTCGCCCCACTTTTCCTCTTTGGACATCCTTCCCTGCATACTTCATGTACCTCATAGCTTTGCTGTTGGTCTTTCTTCTCAAAGATGTTCTCAATTATGTTTAG 882 0.4025 MYQTFIKPWIEHVRKERELKEHLISEVLKHAQNDMVGRLQNDDGTPDKTAIRRDNHISRSELERVVKDIHFNKFVDAEEAVAKLAQDLDVNRDDEISETEFIEGFAKWMNSNSSQAAKSKSSSQGNHQNPTNGASAWLTAIGYVVLGVTMLALLAEPLIASVQQFSEEAGISSFFISFILVPLATNFREATSAIKEASHKKSSNTSQTIYEIYGAVFMNNILGFVVISILIYIREITWQFSADVLVVAIVCTVMGLAATFRPTFPLWTSFPAYFMYLIALLLVFLLKDVLNYV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01821 293 Gene3D - 40 136 - -
Vimu4g01821 293 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 106 285 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vimu4g01821 293 ProSitePatterns EF-hand calcium-binding domain. 89 101 IPR018247 -
Vimu4g01821 293 Pfam Sodium/calcium exchanger protein 141 284 IPR004837 GO:0016020|GO:0055085
Vimu4g01821 293 SUPERFAMILY EF-hand 52 110 IPR011992 -
Vimu4g01821 293 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01821 Vimu-Chr4 19831077 19835838 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01821 1 286 EF-hand Containing Proteins AT1G53210 37.538 7.10e-60 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01821 - - gmx:100799062 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01821 4 19831077 19835838 Vimu4g01821 4 19831077 19835838 ECH