Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01396 ATGGATAGCATAGAGCAGATGAAAGAGGAGATAGAGAAGATTGAAGAAAATCCCAGTTCAGATAGCACAGCAACACCTCTATTAAGGGTAACTAATGATGGAGAAGAGAACACAAGATGGTGGAATGGAGTGTTGGACATGGAAGAGGCCAAACATCAACTATTGTTTTCTCTTCCAATGATTCTTACTAACATATTCTATTACTTGATCACTTCGGTTTCTGTCATGCTAGTAGGTCACCTTGGAGAGCTTCAGCTTGCTGGTGCTACTCTTGCAAACTCATGGTTCAATGTCACTGGCTCTGCAGTCATGGTTGGTTTGAGTGGGGCATTAGAAACACTCTGTGGGCAAGGATTTGGAGCAAAGGAATACCAAGTGTTGGGAATTTACCTACAAGCCTCTTGTATCATATCTCTAATTTTTTCCATCATGGTATCCATTATTTGGTTCTATACAGAACCTGTCCTAGTATTTCTTCATCAATCTCAGGACATTGCAAGAACAACTGCTCTTTATATGAAGTTTTTGATCCCTGGATTATTTGCATACAGCTTCTTGCAAAATATTCTGAGGTTTCTCCAGACACAATCTGTGGTAATGCCATTGGTTGTACTTTCAGCTCTTCCATTGTTGGTTCATATTGGTATTGCATATGCCTTGGTTCAGTGGTCAGGTCTGAGCTTTATAGGTTCACCAGTTGCAGCTTCTATTTCACAATGGATATCAATGCTATTACTGGCCTTTTATGTCATGTATGCTAAGAAGTTCAAGCAGACATGGCAAGGCTTTTCAACGCATTCATTCCATTACGTATTCACAAACATTAAACTGGCTCTGCCCTCTGCTGCAATGGTATGTTTGGAGTACTGGGCTTTTGAAGTTCTGGTTTTCTTAAGTGGTCTACTGCCAAACTCACAGATAACAACTTCGTTGGTTGCAATATGTTTAAACACACAATTCATTGCATACACAATCCCTATTGGTCTCGGGGCTGCTGCAAGCACAAGGGTATCCAATGAATTGGGAGCAGGCAACCCGGAAGGAGCTAAACATGCAATGAATGTCACTGTCAAGCTCTCTTTCCTGCTTAGTTTCTGCTTTGCTTTGGCGCTTGGATTTGGACATGATATCTGGATTCAGCTTTTCATTGATAGTTCTAAAATTAAAGATGAGTTTACTTCAGTGACACCCTTGCTTGCCATTTCTATAGTACTAGATGCTGTTCAAGGTGTCATGCAAGGGGCAGCCAGAGGATGTGGCCTGCAACACTCCACTGCATACATTAATCTTGCAACTTTTTATCTTGTTGGCTTACCAATATCATGTCTCCTGGGATTTAAGACCAATTTGCAGTATAAGGGTTTATGGATTGGTCTGATTTGTGGGCTGCTATGTCAAGCTGGAACTCTCTTCCTTTTCTTAAGGCGTGCCAAATGGACTAAACTGGATGTTCTTAGAGACAAAGATAAAGATCATCACAAACTGGCACAGAATTAA 1497 0.4095 MDSIEQMKEEIEKIEENPSSDSTATPLLRVTNDGEENTRWWNGVLDMEEAKHQLLFSLPMILTNIFYYLITSVSVMLVGHLGELQLAGATLANSWFNVTGSAVMVGLSGALETLCGQGFGAKEYQVLGIYLQASCIISLIFSIMVSIIWFYTEPVLVFLHQSQDIARTTALYMKFLIPGLFAYSFLQNILRFLQTQSVVMPLVVLSALPLLVHIGIAYALVQWSGLSFIGSPVAASISQWISMLLLAFYVMYAKKFKQTWQGFSTHSFHYVFTNIKLALPSAAMVCLEYWAFEVLVFLSGLLPNSQITTSLVAICLNTQFIAYTIPIGLGAAASTRVSNELGAGNPEGAKHAMNVTVKLSFLLSFCFALALGFGHDIWIQLFIDSSKIKDEFTSVTPLLAISIVLDAVQGVMQGAARGCGLQHSTAYINLATFYLVGLPISCLLGFKTNLQYKGLWIGLICGLLCQAGTLFLFLRRAKWTKLDVLRDKDKDHHKLAQN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01396 498 Pfam MatE 280 441 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu4g01396 498 Pfam MatE 59 218 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu4g01396 498 NCBIfam MATE family efflux transporter 59 456 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu4g01396 498 CDD MATE_eukaryotic 49 481 IPR045069 GO:0042910|GO:1990961
Vimu4g01396 498 MobiDBLite consensus disorder prediction 1 17 - -
Vimu4g01396 498 MobiDBLite consensus disorder prediction 1 27 - -
Vimu4g01396 498 PANTHER MULTIDRUG RESISTANCE PROTEIN 47 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01396 Vimu-Chr4 14408511 14410809 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01396 K03327 - gmx:100808113 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01396 4 14408511 14410809 Vimu4g01396 4 14408511 14410809 ECH