Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01383 ATGGCTGCTGCCACAAGCTTTGGAACTGCATGTATTCTGAGAAGAGCAGCTCAGACATTTGCAGTATCTCATTCCCATATCAACAGCAATGCCACCTTCTCTTTTCAAAGGAAACTTTCCTCTCATATTCTATCAGTTTCTACTAGTTCAGAAACTGGGGCAATTTTGTATAAGGTTGTTCTAATGTCATCTAGAGTACTTATTGGTGTCAGTGCTTCAGGTGTAAGCCAAGCAGTACAAGCTTTAAAGGGAGAAGTTGACGTGCTAATCAAGGGAGTAGGAGAAAGAAATGTAGCAAAAGAAGTCAAACATATTCTTGAGATGGCTAGAAGAGCATCATCAAAGCGGGAGACTCTTCATACAGATTTTCTAACCCCTCCAGTGCTAAAGGAATCTATGCAAGTTTTGGAAAAATTAGCAGACGTGAAAGCAATTACTCAAGGAGGTTATCCTCAGGCTGAACGCTGTCGGATTTCAGTTGGACATCCAGAAAAAATGACTAGTGATCCAGACATTATTTCAGCATTGAGCATTAAAGGGAACTTCCAGTTTGAACCTTGTTCACATGGTGACTTCCTTGGCTCAATTCTTGGTACAGGAATTGTGAGGGAGAAACTTGGGGATATTATATTGCAGGGAGAACAGGGTGCGCAAATAATTGTTGTGCCAGAACTGGTTGAATTTCTTATGTCAACCTTGGTTAAGGTTCGTAATGTTCCTGTAACTTGCACCAAGATACCATTAATTTCTCTTGATTATGAACCACCAAGAACAAAATCATTCAAAACTATAGAAGCATCACTAAGAGTTGATGCACTCGCTAGTGCCGGATTTAAGATTTCACGCTCAAAGCTAGTTGAGATGATCAGCAATGGTGATGTGCGTGTCAACTGGATCCCTGTTACTACCAAAGGAAACACACTGAAGAGTGGAGATATTGTATCAGTCAGTGGAAAGGGAAGATTAAAGATAGGAGAAATAAACTCTACAAAGAAAGGGAAATTTGCAGTGGAGCTCATTCGGTATTTGTAG 1032 0.4041 MAAATSFGTACILRRAAQTFAVSHSHINSNATFSFQRKLSSHILSVSTSSETGAILYKVVLMSSRVLIGVSASGVSQAVQALKGEVDVLIKGVGERNVAKEVKHILEMARRASSKRETLHTDFLTPPVLKESMQVLEKLADVKAITQGGYPQAERCRISVGHPEKMTSDPDIISALSIKGNFQFEPCSHGDFLGSILGTGIVREKLGDIILQGEQGAQIIVVPELVEFLMSTLVKVRNVPVTCTKIPLISLDYEPPRTKSFKTIEASLRVDALASAGFKISRSKLVEMISNGDVRVNWIPVTTKGNTLKSGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01383 343 ProSiteProfiles S4 RNA-binding domain profile. 268 328 - -
Vimu4g01383 343 SMART s4_6 268 328 IPR002942 GO:0003723
Vimu4g01383 343 NCBIfam photosystem II S4 domain protein 97 341 IPR017506 -
Vimu4g01383 343 Gene3D - 95 161 - -
Vimu4g01383 343 Pfam S4 domain 272 314 IPR002942 GO:0003723
Vimu4g01383 343 SUPERFAMILY Alpha-L RNA-binding motif 127 331 - -
Vimu4g01383 343 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 98 307 - -
Vimu4g01383 343 Gene3D - 262 319 IPR036986 GO:0003723
Vimu4g01383 343 Pfam Putative RNA-binding domain in YlmH 173 248 IPR040591 -
Vimu4g01383 343 Gene3D - 169 251 IPR012677 -
Vimu4g01383 343 CDD S4 269 323 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01383 - - gmx:100793767 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01383 4 14233537 14238817 Vimu4g01383 4 14233537 14238817 ECH