Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01268 ATGGCAGGTCGAGGTAAAACCCTAGGATCCAGTGCAGCCAAGAAGGCTACCTCCCGGAGCAGCAAAGCCGGTCTTCAATTTCCCGTAGGCCGTATCGCTCGTTTCCTCAAGGCTGGAAAGTATGCAGAGCGTGTCGGTGCTGGTGCCCCTGTCTATCTGGCGGCCGTCCTTGAGTATCTTGCCGCTGAGGTTCTTGAGTTGGCTGGGAACGCAGCCAGAGATAACAAGAAGACTCGAATTGTGCCTCGTCACATTCAATTGGCGGTGAGAAACGATGAAGAGTTGAGCAAGCTTCTTGGAGATGTGACCATTGCTAACGGTGGTGTTATGCCCAACATTCACAATCTGTTGCTTCCAAAGAAGGCTGGTGGCTCATCCAAGGGTGCTGGTGCTGACGATGACTCTTAA 408 0.527 MAGRGKTLGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGGSSKGAGADDDS 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01268 135 Pfam C-terminus of histone H2A 93 127 IPR032454 -
Vimu4g01268 135 PRINTS Histone H2A signature 73 87 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vimu4g01268 135 PRINTS Histone H2A signature 59 72 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vimu4g01268 135 PRINTS Histone H2A signature 101 119 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vimu4g01268 135 PRINTS Histone H2A signature 44 59 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vimu4g01268 135 PRINTS Histone H2A signature 15 37 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vimu4g01268 135 SMART h2a4 4 124 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vimu4g01268 135 FunFam Histone H2A 1 129 - -
Vimu4g01268 135 Pfam Core histone H2A/H2B/H3/H4 11 90 IPR007125 GO:0003677
Vimu4g01268 135 Gene3D Histone, subunit A 1 128 IPR009072 GO:0046982
Vimu4g01268 135 SUPERFAMILY Histone-fold 10 123 IPR009072 GO:0046982
Vimu4g01268 135 MobiDBLite consensus disorder prediction 1 23 - -
Vimu4g01268 135 CDD H2A 9 121 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vimu4g01268 135 ProSitePatterns Histone H2A signature. 23 29 IPR032458 -
Vimu4g01268 135 PANTHER HISTONE H2A 13 121 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01268 Vimu-Chr4 12089050 12089644 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01268 K11251 - gmx:100500068 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01268 4 12089050 12089644 Vimu4g01268 4 12089050 12089644 ECH