Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01217 ATGGATTATGAACCACCATTCCTAGAGACCTACAAGACCCTTGTGCAGAAACACCTAGGGGATTCAAGGAATAATAATGACTACTGCAGCTCTACAGTGGAGAGATGTGATATACCTTTGATCGACCTTGGGAGGTTAAGTGTTGAGAGAGAGGAATGCATGAAAGAAATTGCAGAAGCTGCAAGAGAATGGGGTTTCTTTCAAGTTGTGAATCATGGTATTCCACAGGAGCTGCTCAAGAGCATGCAGATTGATCAAAAGAAAGTGTTCTATCAACCTTTTGTGAACAAGTCAACACAGCAAGCTATTTTCTCTACCTTATCTGCCAAAGCTTATAGGTGGGGGAATCCCTTTGCCACCAATCTCAGACAACTGTCATGGTCAGAAGCCCTTCACTTTTATGTCACTGACATCTCAAGAATGGACCGACATGAAACTCTGAGATCAAACCTTGAAGGTTTTGCAACACGCATGTTCTCCCTTGCACAGAGCTTATCTGAAATACTAGCCTGCAAACTGAATGCGAAATCGAACTATTTTCGAGAGCATTGCTGGCCAAAGAGTTCATTTATTCGATTGAATAGATATCCTCCATGCCCTATATCAAAGATGCATGGCTTGATACCTCACTGTGACACTAGTTTTCTCACCATCGTACATCAAGACCATGTTGGGGGATTGCAATTGATGAAAGATGGAAAATGGGTTGCTGTTAAGCCTAATCCACATGCTCTGGTCGTTAACATTGGTGACTTGTTTCAGGCATGGAGCAATGGTGTTTATAAAAGCATAAAACACAGAGTTGTTGCTGCAGAGAGTGCTGAAAGGTTTTCTATGGCATTTTTCTATTGTCCCTTGGAGGAAGCAGTAATTAAAAGCCACATGAAGCCATCTATGTACAGAAAATTCACTTTTAAGGAGTATAAAGAACAGGCTGAGAAAGATGTCAAGCAAACTGGGGGAAAAGTGGGGCTCTCCAGATTTCTTCTGTAG 993 0.4189 MDYEPPFLETYKTLVQKHLGDSRNNNDYCSSTVERCDIPLIDLGRLSVEREECMKEIAEAAREWGFFQVVNHGIPQELLKSMQIDQKKVFYQPFVNKSTQQAIFSTLSAKAYRWGNPFATNLRQLSWSEALHFYVTDISRMDRHETLRSNLEGFATRMFSLAQSLSEILACKLNAKSNYFREHCWPKSSFIRLNRYPPCPISKMHGLIPHCDTSFLTIVHQDHVGGLQLMKDGKWVAVKPNPHALVVNIGDLFQAWSNGVYKSIKHRVVAAESAERFSMAFFYCPLEEAVIKSHMKPSMYRKFTFKEYKEQAEKDVKQTGGKVGLSRFLL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01217 330 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 38 311 - -
Vimu4g01217 330 Pfam 2OG-Fe(II) oxygenase superfamily 191 285 IPR044861 -
Vimu4g01217 330 Pfam non-haem dioxygenase in morphine synthesis N-terminal 38 137 IPR026992 -
Vimu4g01217 330 Coils Coil 43 63 - -
Vimu4g01217 330 FunFam Gibberellin 2-beta-dioxygenase 8 36 322 - -
Vimu4g01217 330 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 187 285 IPR005123 -
Vimu4g01217 330 Gene3D - 36 324 IPR027443 -
Vimu4g01217 330 SUPERFAMILY Clavaminate synthase-like 29 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01217 Vimu-Chr4 11134242 11137022 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01217 32 328 Glycosyltransferase AT5G59530 33.123 7.04e-44 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01217 K04125 - gmx:106795437 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01217 4 11134242 11137022 Vimu4g01217 4 11134242 11137022 ECH