Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01210 ATGTGGAGAGATCCGGGAGTTTCAGCTGATTCTTTCTATGAAATCCGCCCGGAATGTACCGATGTTCCTATTTCTCGATTTAAAATCAAGGCTGGTAAAACACTAAGTGCAAGGAAGTGGCATGCTGCATTTACTCCAGAAGGGTATCTAGATATAGGCAAGACTCTAAGCCGAATCTACCGTGGGTGCCATGGGGAACTCTGGCTGGCTGGAAAACATAAGGGAGTCCATCCATCTATTAGGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGACCCCAAAAGTACATTTGAGGAAAGAGATCAGATAAGACACCGCAGAAGAATGCAATATGCTACACTTAAAGAAGAATGCCGCCAATTGTTTCCTCTTATTGGAAGTGGTAGATTTGTCACAGCACCTGTTGTTACTGAAGATGGTCATCCAATTCAAGATCCATTGGTTCTGAAAGAAACAAATTCAGCCAAGGGATTGGATGTACATCATCAAGATAATAATAATCATTCAAGTAGGATTGCTACAAATAGTTTACAGAAGGTAACAGACAAGATAGTAGTCCAGTGGCTGTTAACTCTCCATCAAATAGGTCTTGATGTGGTTCGCACTGATAGGACATTAGTTTTTTATGAGAAGCAGGAAAACCTGTCAAAATTATGGGATGTACTAGCTGTTTATGCTTGGGTTGAATCTCAGTTTCTTATTATTTCTGTTCTTGAATTTGTAAAGCGCGGGAATTTTAGATGCACTGAGAGCTCTGTTGGGGTGACATCTCAACTAAATGTGTTGGCTTCAGTTACTCAAGTAATTGATCCAAAACTTCATAACCATTTAGACAATCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGAATGCTAATGGTTTTGTTTCGTCGAGAATTCTCCTTTTGTGATTCATTGTATCTTTGGGAGATGATGTGGGCCTTGGAATATGATCCTGACTTGTTCTTGATGTATGAAATGCCTGAATCAGCTTCTGAAAAAGCTGTGGGCTCAAAAGGGAAATCAAAGTCAATACGTCAATGTGGAAAGTATGAGAGGGAATTTTTGAAGAGTGGATCAAAGAATGCTTCTCAAGCTCCTCTTCCTATATCTGTTTTCCTTGTTGCTAGTGTTTTGAAAGATAAAAGTTCAAAACTACTCCAAGAAGCACGGGGTCTGGATGATGTTGTCAAGGCCAAGAAACCCTAG 1212 0.4018 MWRDPGVSADSFYEIRPECTDVPISRFKIKAGKTLSARKWHAAFTPEGYLDIGKTLSRIYRGCHGELWLAGKHKGVHPSIRGEVWEFLLGCYDPKSTFEERDQIRHRRRMQYATLKEECRQLFPLIGSGRFVTAPVVTEDGHPIQDPLVLKETNSAKGLDVHHQDNNNHSSRIATNSLQKVTDKIVVQWLLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDVLAVYAWVESQFLIISVLEFVKRGNFRCTESSVGVTSQLNVLASVTQVIDPKLHNHLDNLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFLMYEMPESASEKAVGSKGKSKSIRQCGKYEREFLKSGSKNASQAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKAKKP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01210 403 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 73 277 IPR035969 -
Vimu4g01210 403 Pfam Rab-GTPase-TBC domain 249 315 IPR000195 -
Vimu4g01210 403 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 255 399 IPR035969 -
Vimu4g01210 403 Gene3D - 253 400 - -
Vimu4g01210 403 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 37 399 - -
Vimu4g01210 403 ProSiteProfiles TBC/rab GAP domain profile. 75 317 IPR000195 -
Vimu4g01210 403 SMART tbc_4 72 340 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01210 Vimu-Chr4 10983116 10991333 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01210 - - gmx:100805808 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01210 4 10983116 10991333 Vimu4g01210 4 10983116 10991333 ECH