Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01208 ATGATTACCTCCAGCAAACTCAAATCGGTGGATTTTTACAGAAAAATCCCAAGAGATTTAACTGAGGCTTCAGTATCAGGAGCAGGGTTATCCATAATAGCAGCTCTCTGCATGGTGTTTTTGTTTGGAATGGAACTTAATAGTTATTTGTCTGTCAGCACCGCTACATCTGTTATTGTTGACAAGAGTAGTGATGGGGACTATTTACGTATAGATTTCAATATGAGTTTTCCTGCCCTTTCTTGTGAGTTTGCAGCGGTTGATGTGAGTGATGTGCTGGGCACAAACAGGCTGAATCTAACAAAAACAATTCGCAAGTTTTCTATTGATTCAAATTTAAGAACCACTGGTAACGAGTACCATTCAGAACCAGCTACTACGAACATAAAGCACGATAATGAAGTACATGAAGAATCCATTGGAGGTTCTCTTGAACTCACATCAGATAATTTTGATAAATATGCTCACCAATATGATCCAGAAACGGATGGTCGTATTGTTATGGGGAGGGTAGATTGCACTCAAAATGGAGAATTGTGCCGGAGGAGTGACCATGGACATCATGAGCACGAGTCCTATTACGGTGATCGCGACACAGATAGCCTAGTCAAGACCATGGACAATTTAGTGGCGTCTCTTCCTTCAGAATCTCAGAAGTTAAGTTTGGGGGATAAATCCACTTTTGCGTCACATACAAAAAGACCAGCACCATCAGCTGGGGGATGTAGAATTGAAGGATATGTGCGTGTTAAGAAGGTTCCTGGAAACTTAATCATCTCAGCTAGATCCGATGCCCATTCCTTTGATGCTTCCCAAATGAACATGTCACATGTCATAAACCACTTATCTTTTGGAAGGAAAGTGTCACCTAGGGTTATGAGTGATGTGAAGCGCTTGATACCTTACGTAGGTAGCAGTCATGACAGGCTGAATGGCCTGTCATTTATCAACACACGTGATTTAGGAGCAAATGTTACTATGGAGCATTACCTTCAGGTAGTTAAAACAGAGGTGATAACGAGAAAAGATTATAAATTAGTTGAGGAGTATGAGTATACAGCGCACAGCAGTGTTGCACAGAGTTTACACATTCCTGTTGCTAAGTTCCATCTTGAGCTCTCCCCCATGCAGGTCTTAATAACAGAAAATCCGAAGTCCTTTTCTCACTTCCTTACGAATGTCTGTGCTATTATTGGGGGTGTTTTCACGGTTGCTGGAATTTTGGACTCCATTTTGCACAACACTATTAGACTAATGAAAAAAGTTGAGCTTGGCAAAAATTTTTGA 1287 0.4087 MITSSKLKSVDFYRKIPRDLTEASVSGAGLSIIAALCMVFLFGMELNSYLSVSTATSVIVDKSSDGDYLRIDFNMSFPALSCEFAAVDVSDVLGTNRLNLTKTIRKFSIDSNLRTTGNEYHSEPATTNIKHDNEVHEESIGGSLELTSDNFDKYAHQYDPETDGRIVMGRVDCTQNGELCRRSDHGHHEHESYYGDRDTDSLVKTMDNLVASLPSESQKLSLGDKSTFASHTKRPAPSAGGCRIEGYVRVKKVPGNLIISARSDAHSFDASQMNMSHVINHLSFGRKVSPRVMSDVKRLIPYVGSSHDRLNGLSFINTRDLGANVTMEHYLQVVKTEVITRKDYKLVEEYEYTAHSSVAQSLHIPVAKFHLELSPMQVLITENPKSFSHFLTNVCAIIGGVFTVAGILDSILHNTIRLMKKVELGKNF 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01208 428 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 5 427 IPR045888 -
Vimu4g01208 428 Pfam Endoplasmic reticulum vesicle transporter 237 409 IPR012936 -
Vimu4g01208 428 CDD PDI_a_family 144 206 - -
Vimu4g01208 428 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 7 97 IPR039542 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01208 Vimu-Chr4 10954755 10962908 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01208 - - gmx:100809522 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01208 4 10954755 10962908 Vimu4g01208 4 10954755 10962908 ECH