Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01163 ATGTCTTCAAGTGGGAAGGATTTGGTAGAAGGATCAAGCTCTCCAACAGGGACACCTAGTCGCTATGAGTCTCAAAAGAGAAGGGATTGGAACACTTTTGGGCAGTACTTGAAGAATCAGAGACCCCCAGTTCCACTCTCTCAGTGCAATTGCAACCATGTGTTGGATTTTCTAAGGTATCTGGACCAGTTTGGGAAGACCAAGGTTCATGTTCAAGGGTGCATGTTCTATGGGCAGCCAGAACCTCCAGCACCCTGCACATGCCCCCTTAGACAGGCTTGGGGAAGCCTTGATGCTCTCATAGGTAGGCTCAGGGCTGCTTATGAGGAAAATGGTGGCTCCCCAGAGACTAACCCTTTTGCAAGTGGCTCCATCCGTGTCTATCTCAAAGAGGTTAGAGAGTGCCAAGCTAAGGCTAGAGGTATCCCATACAAGAAGAAAAAGAAGGGCACAAATCAAACCAAGCCAAATGATGAATCAACCTCCACCATCCACTTCTCTTGA 504 0.4821 MSSSGKDLVEGSSSPTGTPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGSIRVYLKEVRECQAKARGIPYKKKKKGTNQTKPNDESTSTIHFS 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01163 167 MobiDBLite consensus disorder prediction 1 21 - -
Vimu4g01163 167 MobiDBLite consensus disorder prediction 1 26 - -
Vimu4g01163 167 MobiDBLite consensus disorder prediction 140 167 - -
Vimu4g01163 167 PANTHER PROTEIN G1-LIKE2 14 156 IPR040222 -
Vimu4g01163 167 ProSiteProfiles ALOG domain profile. 21 148 IPR006936 -
Vimu4g01163 167 Pfam ALOG domain 14 134 IPR006936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01163 Vimu-Chr4 10326389 10329990 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01163 - - gmx:100306225 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01163 4 10326389 10329990 Vimu2g00773 2 4732070 4732621 ECH
Vimu4g01163 4 10326389 10329990 Vimu4g01163 4 10326389 10329990 ECH
Vimu4g01163 4 10326389 10329990 Vimu5g01245 5 22107573 22108133 ECH
Vimu4g01163 4 10326389 10329990 Vimu5g01245 5 22107573 22108133 PCT
Vimu5g00607 5 6697169 6697765 Vimu4g01163 4 10326389 10329990 PCT