Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00563 ATGCCTAGTTCACTTACATCAAGAAACTCAACGTTAAATAGTTTACCAACTGGGGGAGGAGTTCAACAACCTTCAGCAAGCCTTTCAAGTGGACGATTTGCATCAAATAATCTACCCGTTGCTCTGTCACAGCTATCTCATGGAAGCTCTCATGGACATTCAGGAGTCAACAGTAGAGGAGGTATAAGTGTTATAGGAAATCCTGGATTTAATAGTAGCACAAATGGAGTTGCTGGTCCTATTCCTGGGATTCTTCCAACTTCTGCTGCAATTGGTAACCGAAATGCTGTTCCAGGATTGGGAGTATCCCCAATTTTGGGAAATGCAGGTCCTCGAATCACTAGTTCGATGGGAAACATGGTTGGTGGGGGCAACATTGGGAGGATAAGCTCTGGAGGATTGTCTGTTCCTGGCCTCGCTTCTCGTATAAATTTAGGTGGAAATGCTGGATCTGGTGGTTTAGGTGTGCAAGGACAGAATCGATTGATAAGTAGTGTTCTTCCACAAGGATCTCCACAGGTAATTTCAATGCTAGGAAATTCCTATCCTAGTGCTGGAGGTCCACTTTCTCAAAGTCATGTTCAAACAGTAAATAACTTGAACTCTATGGGGATGCTGAATGATGTGAATTCCGGTGACAGTTCACCATTTGATATCAATGACTTCCCTCAACTGACCACTCATCCTAGTTCTGCTGGTGGGCCTCAAGGACAGTTGGGTTCTTTACGAAAACAGGGTATTGGAGTCAGTCCCATTGTCCAACAAAACCAAGAGTTTAGTATTCAAAAGGAAGATTTCCCAGCTTTACCAGGATTCAAAGGTGGTAATGCCGATTTTGCAATGGATATGTACCAGAAAGAACAACTTCATGATAGCACTGTGTCAATGATGCAATCTCAGCATTTCTCTATGGGGCGATCTTCTGGTTTCAGTTTGGGGGGATCATATCCATCACATCGCACACAGCAGCATGCCCCTTCAGTCAGTAGTAATGGTGTCTCCTTTTCATCTGTAAACAGTCAAGACCTCCATTTGCATGGAACAGATATGTTTCCATCTTCACACTCAACCTATCATTCCCAGACCAGTGGACCTCCTGGCATTGGACTAAGGCCTTTAAATTCTCCAAATACGGGTATGGGTTCATATGACCAGCTTATTCAGCAGTATCAACAGCAGCAGAACCAGTCGCAATTCCGCCTTCAGCAAATGTCAGCTGCAAATCAGTCTCTTAGGGATCAGGGCATGAAGTCCATGCAAAGTGCGCAATCTAGTCCAGATCCATTTGGTGCACTTGGCTTGTTCAGTGTAGTCCATATAAGTGATCCTGACCTGAAATATCTTGCTCATGGGATTGATCTCACAACGCTTGGGTTGAATTTGAATTCATCAGAAAATCTTTACAAGACTTTTCGATCACCATGGTCTGATGAACCGGCCAAGGGTGATCCAGAGTTCAGTGTGCTACAATGTTATTATGCTAAACAGCCGCCTGCACTACATGTGAATCAAGGTTATTTTTTGAAGTTTTCGGTGGAAACATTGTTTTACATATTTTACAGCATGCCCAAGGATGAAGCACAACTATATGCAGCAAATGAACTGGTTGTTGCTCGCAGTTACAAACGAGGTTGGTTTTATCATAAAGAACACCGTTTTTGGTTTATAAGAGTTGCCAACATGGAGCCGCTTGTCAAAACAAATACATACGAGAGAGGATCTTACCATTGTTTTGATCCAAATACCTTTGAAACAGTCCGAAAGGATAATTTTGTTCTTCATTATGAATTGGTGGAAAAGAGACCGTCTTTACCTCAACGTTAA 1824 0.4276 MPSSLTSRNSTLNSLPTGGGVQQPSASLSSGRFASNNLPVALSQLSHGSSHGHSGVNSRGGISVIGNPGFNSSTNGVAGPIPGILPTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMVGGGNIGRISSGGLSVPGLASRINLGGNAGSGGLGVQGQNRLISSVLPQGSPQVISMLGNSYPSAGGPLSQSHVQTVNNLNSMGMLNDVNSGDSSPFDINDFPQLTTHPSSAGGPQGQLGSLRKQGIGVSPIVQQNQEFSIQKEDFPALPGFKGGNADFAMDMYQKEQLHDSTVSMMQSQHFSMGRSSGFSLGGSYPSHRTQQHAPSVSSNGVSFSSVNSQDLHLHGTDMFPSSHSTYHSQTSGPPGIGLRPLNSPNTGMGSYDQLIQQYQQQQNQSQFRLQQMSAANQSLRDQGMKSMQSAQSSPDPFGALGLFSVVHISDPDLKYLAHGIDLTTLGLNLNSSENLYKTFRSPWSDEPAKGDPEFSVLQCYYAKQPPALHVNQGYFLKFSVETLFYIFYSMPKDEAQLYAANELVVARSYKRGWFYHKEHRFWFIRVANMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYELVEKRPSLPQR 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00563 607 PANTHER CCR4 NOT-RELATED 1 601 IPR040168 GO:0030015
Vimu4g00563 607 MobiDBLite consensus disorder prediction 205 243 - -
Vimu4g00563 607 FunFam probable NOT transcription complex subunit VIP2 isoform X1 419 607 - -
Vimu4g00563 607 MobiDBLite consensus disorder prediction 205 238 - -
Vimu4g00563 607 MobiDBLite consensus disorder prediction 1 32 - -
Vimu4g00563 607 MobiDBLite consensus disorder prediction 313 335 - -
Vimu4g00563 607 Pfam NOT2 / NOT3 / NOT5 family 469 596 IPR007282 GO:0006355
Vimu4g00563 607 MobiDBLite consensus disorder prediction 352 382 - -
Vimu4g00563 607 Gene3D - 418 607 IPR038635 -
Vimu4g00563 607 MobiDBLite consensus disorder prediction 352 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00563 Vimu-Chr4 4066851 4077654 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00563 K12605 - gmx:100806559 1065.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00563 4 4066851 4077654 Vimu5g02022 5 32128395 32128775 PCT