Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00399 ATGGCCTTCAACAATGGCGTCCCTGCCACCGGCACCGGCCTCATCGCCAGCTTCGGCGAGATGCTCATCGACTTCGTTCCCACCGTCTCCGGCGTCTCCCTGGCGGAGGCTCCTGGCTTCCTAAAGGCACCCGGCGGCGCCCCCGCTAATGTCGCCATCGCAGTCGCGAGACTCGGCGGCAAGGCCGCCTTCGTTGGAAAACTCGGTGACGACGAGTTCGGCCACATGCTTGCCGGAATCCTGAAGGAGAACGGAGTCCGCGCCGACGGGATCACCTTCGACCAGGGCGCCCGCACCGCTCTGGCGTTTGTGACCCTACGCGCCGACGGAGAGCGTGAGTTCATGTTCTACCGAAACCCCAGCGCCGACATGCTCCTTCAACCCGAAGAACTCAACCTCGAACTCATCAGATCTGCAAAAGTTTTCCATTACGGATCAATTAGTTTGATCGTGGAGCCATGCAGATCAGCACACTTGAAGGCAATGGAAGTTGCCAAAGAAGCTGGGTGCTTGCTCTCCTATGACCCCAACCTCCGTCTCCCCTTGTGGCCCTCGGCCGATGAAGCTCGTAAGCAGATACTCAGCATATGGGAGAAGGCTGATCTGATCAAGATCAGTGATGTGGAGCTCGAGTTCCTCACAGGAAGTGACAAGATTGATGATGCTTCTGCTTTGTCATTGTGGCACCCCAATTTGAAGTTGCTCCTTGTCACTCTAGGAGAACACGGTTCCAGATACTACACCAAGAATTTCAAAGGATCAGTAGATGCTTTTCATGTCAAGACTATTGATACAACTGGTGCCGGCGATTCCTTTGTTGGTGCTCTGTTGTCCAAGATTGTCGATGATCAGTCCATCCTTGAAGATGAATCAAGGTTAAGAGACGTACTCAAGTTTGCTAATGCATGTGGAGCAATTACAACTACCCAAAAGGGAGCAATTCCCGCCCTTCCCAAAGAGGAGGATGCACTGAAACTGATCAAAGGGGCATAG 993 0.5378 MAFNNGVPATGTGLIASFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVRADGITFDQGARTALAFVTLRADGEREFMFYRNPSADMLLQPEELNLELIRSAKVFHYGSISLIVEPCRSAHLKAMEVAKEAGCLLSYDPNLRLPLWPSADEARKQILSIWEKADLIKISDVELEFLTGSDKIDDASALSLWHPNLKLLLVTLGEHGSRYYTKNFKGSVDAFHVKTIDTTGAGDSFVGALLSKIVDDQSILEDESRLRDVLKFANACGAITTTQKGAIPALPKEEDALKLIKGA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00399 330 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 45 69 IPR002173 GO:0016301
Vimu4g00399 330 PRINTS Ribokinase signature 235 246 IPR002139 GO:0016301
Vimu4g00399 330 PRINTS Ribokinase signature 40 59 IPR002139 GO:0016301
Vimu4g00399 330 Pfam pfkB family carbohydrate kinase 14 319 IPR011611 -
Vimu4g00399 330 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 264 277 IPR002173 GO:0016301
Vimu4g00399 330 SUPERFAMILY Ribokinase-like 15 326 IPR029056 -
Vimu4g00399 330 Gene3D - 13 330 IPR029056 -
Vimu4g00399 330 PANTHER HEXOKINASE FAMILY MEMBER 14 324 - -
Vimu4g00399 330 FunFam Probable fructokinase-2 12 330 - -
Vimu4g00399 330 CDD bac_FRK 14 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00399 Vimu-Chr4 2844472 2847836 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00399 K00847 - gmx:100803713 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00399 4 2844472 2847836 Vimu4g00399 4 2844472 2847836 ECH
Vimu4g00399 4 2844472 2847836 Vimu5g02246 5 33654788 33662291 PCT