Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00221 ATGCGAATCTCAAAAGCTTCCTTTTATGCTCTCCTCCTTCACAAACCTTACAACCACCAAAACCTCGTCGTTTTATCACGGCGTCGTGTTATCTCGTGCGCTCTGAGTATGGCGCTGCTCGTGAGCACGCTCTATGTTCTGTGGCCGTCGGATCCAGATCTGAAGATCGTGGGGCTGAAGCTGCGGCGGATAAAGGTGCACCCTGTGCCGCCCGTCACCGTGGACATCTCCATGCTGCTGACGCTCCAGGTCCGCAACGCTGACGTGTACTCCATGGACTTGGGTGCGGTAAACGTGGCAGTGGCGTACAGAGGGAAGATGCTGGGTCACGTGAGGTCGAGGGAGGTGCACGTGAGGGCGAGGGGGTCTTCCCACGTGGATGCTGACGTGGAATTCGCCGGCATTACTGTTCTGCCTGAGCTGGTGCTGCTTCTGGAGGACGTGGCCAAAGGTATCGTACCCTTTGACACAGTTAGCCACACTGGTGGCCAATTCGGCATTTTCTTCTTTCACTTTCCCATCAAGGGTCCCCAGAAGCGTCCAAAGATGCTTGCCACTGGACAGTCAAATGCTATCAACTTCTGGTTTGTTAGATTGAAGATACCAAGCTGGACAACATTTTGGAGGAAGATCAAGAGGGAAAAGAGGAGGCTATTCAGTGCTTCACCGGCTGTTCATGCTCAATACGACCCAAATTCCTACTCACAAAACTTCGATGATGGCTATTCCAACGACCCTGATAACGTTTCTCGTTCATTTTCAGCTCGATTTGCGGTACCCTCCAAGATCTTTGAGAAGAATGAAATAGTGTGCACTGCTGATAATTTGTGA 831 0.5162 MRISKASFYALLLHKPYNHQNLVVLSRRRVISCALSMALLVSTLYVLWPSDPDLKIVGLKLRRIKVHPVPPVTVDISMLLTLQVRNADVYSMDLGAVNVAVAYRGKMLGHVRSREVHVRARGSSHVDADVEFAGITVLPELVLLLEDVAKGIVPFDTVSHTGGQFGIFFFHFPIKGPQKRPKMLATGQSNAINFWFVRLKIPSWTTFWRKIKREKRRLFSASPAVHAQYDPNSYSQNFDDGYSNDPDNVSRSFSARFAVPSKIFEKNEIVCTADNL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00221 276 SUPERFAMILY LEA14-like 38 182 - -
Vimu4g00221 276 Pfam Late embryogenesis abundant protein 81 161 IPR004864 -
Vimu4g00221 276 PANTHER STRESS INDUCED PROTEIN-RELATED 202 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00221 Vimu-Chr4 1562845 1566429 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00221 - - gmx:100792375 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00221 4 1562845 1566429 Vimu4g00221 4 1562845 1566429 ECH
Vimu4g00221 4 1562845 1566429 Vimu11g02831 11 48366828 48371724 PCT