Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu4g00110 | ATGGTTCTGGCGGAGTTAGGGGGGAGCATTTCGCGTGCTCTCCAGCAGATGAGCAATGCGACGGTTATCGACGAGAAGGTGCTGAACGATTGCCTCAACGACATCACTCGCGCTCTTCTCCAATCCGATGTGCAATTCAAGCTTGTGCGCGACATGCAGACTAACATCAAGCACATTGTCAACCTCGACGACCTGGCTGCCGGGCACAACAAACGCAGGATCATTCAACAAGCTGTGTTTAACGAACTCTGCAAGATACTGGACCCTGGGAAGCCCTCTTTTACTCCCAAAAAGGGAAAAACAAGTGTTGTTATGTTTGTTGGTTTGCAAGGTTCTGGGAAAACCACAACCTGTACAAAATACGCATATTATCATCAGAAGAAAGGCTGGAAACCAGCTCTAGTATGTGCGGATACGTTCAGAGCTGGTGCATTTGATCAATTGAAGCAAAATGCAACCAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAATCTGATCCTGTAAAAATTGCAGTGGAAGGTGTGGAGAGATTCAAGGAAGAAAACTGTGATCTTATAATCGTTGATACCAGTGGGAGACACAAGCAAGAAACTGCTCTTTTTGAAGAAATGCGTCAAGTTTCAGAAGCAACGAAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAAGCCCAGGCGTTTAAACAGAGTGTTGCAGTTGGAGCTGTAATAGTTACCAAAATGGATGGCCATGCAAAAGGTGGTGGTGCTCTTAGTGCTGTTGCAGCAACAAAGAGTCCTGTCATATTCATCGGAACTGGAGAACATATGGATGAATTTGAAGTTTTTGATGTTAAGCCATTTGTCAGTCGTCTATTAGGGATGGGTGACTGGTCTGGGTTCATGGACAAAATTCAAGAGGTTGTGCCTATGGATCAACAACCCGAACTACTTCAAAAGCTGTCAGAAGGAAACTTCACCTTGAGGATTATGTATGAGCAGTTTCAGAAGATACTTAAAATGGGTCCTATCAGCCAGGTATTTTCTATGCTTCCCGGATTTGGTGCCGAATTAATGCCAAAAGGCCAGTTGGATAGTTCAAACCCAAAGCTCATGAATGAATCACGTATCATGCGGATAGCCCGAGGTGCAGGTCGTCAAATTAGGGAAGTGATGGAGATGATGGAAGAGTACAAACGTCTTGCAAAAATATGGAGCAAAATGAAAGGACTAAAAATACCGAAGAAAGGTGAAATGAGTGCCCTATCCCGAAATATGAATGCCCAGCACATGAGCAAAGTCCTCCCTCCGCAGATGCTGAAACAAATCGGTGGCATGGGCGGGTTACAAAACTTGATGAAGCAGATGGGATCTGCCAAAGACATGATGGGAATGGGAGGATTGTTTGGTGGTGGCGGTGATTAG | 1431 | 0.4458 | MVLAELGGSISRALQQMSNATVIDEKVLNDCLNDITRALLQSDVQFKLVRDMQTNIKHIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKEENCDLIIVDTSGRHKQETALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIQEVVPMDQQPELLQKLSEGNFTLRIMYEQFQKILKMGPISQVFSMLPGFGAELMPKGQLDSSNPKLMNESRIMRIARGAGRQIREVMEMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMGGLFGGGGD | 476 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu4g00110 | 476 | ProSitePatterns | SRP54-type proteins GTP-binding domain signature. | 269 | 282 | IPR000897 | GO:0005525|GO:0006614 | |
| Vimu4g00110 | 476 | Gene3D | - | 91 | 285 | IPR027417 | - | |
| Vimu4g00110 | 476 | SMART | SRP54_3 | 101 | 296 | IPR000897 | GO:0005525|GO:0006614 | |
| Vimu4g00110 | 476 | PANTHER | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 | 1 | 462 | IPR022941 | GO:0003924|GO:0005525|GO:0006614|GO:0048500 | |
| Vimu4g00110 | 476 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 95 | 298 | IPR027417 | - | |
| Vimu4g00110 | 476 | SMART | SRP54_N_2 | 2 | 87 | IPR013822 | GO:0005525|GO:0006614 | |
| Vimu4g00110 | 476 | CDD | SRP54_G | 102 | 294 | - | - | |
| Vimu4g00110 | 476 | Gene3D | - | 366 | 411 | IPR036891 | GO:0006614|GO:0008312|GO:0048500 | |
| Vimu4g00110 | 476 | SMART | AAA_5 | 100 | 277 | IPR003593 | GO:0016887 | |
| Vimu4g00110 | 476 | Pfam | SRP54-type protein, GTPase domain | 102 | 296 | IPR000897 | GO:0005525|GO:0006614 | |
| Vimu4g00110 | 476 | NCBIfam | signal recognition particle protein SRP54 | 2 | 373 | IPR006325 | GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500 | |
| Vimu4g00110 | 476 | Hamap | Signal recognition particle 54 kDa protein [srp54]. | 6 | 455 | IPR022941 | GO:0003924|GO:0005525|GO:0006614|GO:0048500 | |
| Vimu4g00110 | 476 | SUPERFAMILY | Signal peptide-binding domain | 298 | 411 | IPR036891 | GO:0006614|GO:0008312|GO:0048500 | |
| Vimu4g00110 | 476 | Gene3D | - | 5 | 306 | IPR042101 | - | |
| Vimu4g00110 | 476 | Pfam | SRP54-type protein, helical bundle domain | 6 | 83 | IPR013822 | GO:0005525|GO:0006614 | |
| Vimu4g00110 | 476 | SUPERFAMILY | Domain of the SRP/SRP receptor G-proteins | 1 | 94 | IPR036225 | - | |
| Vimu4g00110 | 476 | FunFam | Signal recognition particle 54 kDa subunit | 90 | 285 | - | - | |
| Vimu4g00110 | 476 | FunFam | Signal recognition particle GTPase | 5 | 97 | - | - | |
| Vimu4g00110 | 476 | Gene3D | - | 311 | 365 | IPR036891 | GO:0006614|GO:0008312|GO:0048500 | |
| Vimu4g00110 | 476 | Pfam | Signal peptide binding domain | 327 | 360 | IPR004125 | GO:0006614|GO:0008312|GO:0048500 | |
| Vimu4g00110 | 476 | Pfam | Signal peptide binding domain | 369 | 405 | IPR004125 | GO:0006614|GO:0008312|GO:0048500 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu4g00110 | Vimu-Chr4 | 661504 | 664832 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu4g00110 | K03106 | - | gmx:100789217 | 872.463 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vimu4g00110 | 4 | 661504 | 664832 | Vimu4g00110 | 4 | 661504 | 664832 | ECH | |
| Vimu4g00110 | 4 | 661504 | 664832 | Vimu11g02763 | 11 | 47921246 | 47924127 | PCT |