Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03684 TTGTTTTGTTCCATTCCTCTGCAACCAAACCTATCTATCTATTTCTTGTTCCTCCTCTTCAAGGTATCCATAATCATCTCTCATAGCTCATCATTCTTCAATCTCTGTTTGCACAATCCAATTCTTTTTCTTATTCCACAGGATAGGATGAACAAGAGGCCTATAACCGCCGTCTACAAGGCCATTCCCGATCTCTGCCATCGAGAACTTGGCCATCTACCGCCCAGAAATTTCGCTCTTCGACTTGGCGCCTCCGAGGATCTTGTCCTTCGACTTGATGTGCTCAGGAAACTGCACAAGCACAGAGGTTGTGTCAACACTGTCAGCTTCAATACTGATGGGGACATTCTGGTGTCCGGTTCTGATGATTGGAGGGTTATTCTCTGGGACTGGGAAACTGGCCGTATCAAACTCTCTTTCCATTCTGGTCACAATAACAATGTTTTCCAGGCCAAGATCATGCCCCACTCTGAGGATCGAAGCATTGTCACCTGTGCTGCTGATGGACAGGTTAGACATGCTAAAATTCTTGAAAATGGAGGAGTGGAAACTAAGTTTCTGGCCAAGCATCAAGGAAGGGCTCATAAATTGGCTATTGAACCCGGTAGTCCTCATATATTTTATACATGTGGTGAAGATGGATTAGTACAGCATTTTGATCTAAGAATTGGGGTCCCAACAGAACTTTTTACATGCCAGCCAATTCAGGATAGATGGAACTATATGCCAGTCATCCATCTTAATGCTATTGCAATTGATCCAAGGAACCCAAATCTCTTTGCCGTTGCTGGGACTGATGAATATACTAGACTCTATGATATTCGCAAGTATAAATGGGATGGATCTACTGATTTTGGTCAACCAACCGACTTCTTTTGTCCTCCTCAATTGATTGGTGACGAGCGGGTTGGAATAACAGGCTTGGCCTTTTCTGAACAAAGAGAGCTGCTTGTGTCATACAATGACGAGTTTATTTACCTTTTTACCCAAGATATGGGTTTGGGACCCAACCCTGAACCTGGGTTTCCTAAATCTATGAACTGTGATGCAGGTGAAGTTGGATTTAGTCATGGATCTGTGTGGTCTCAATCCAACATGGATGGCGATGAAAAAATCACCCCGCAAGTATTTAAGGGACACAGGAATTGTGACACAGTTAAGGGTGTTAACTTTTTTGGACCCAACTGTGAGTATGTGGTGAGTGGGTCGGACTGTGGTCGGATTTTTGTATGGAAAAAGAAAAGTGGTCAGCTTATTCGTGTCATGGAAGCAGATAAGCATGTTGTGAATTGCATTGAGTCTCATCCTCATACAATGGTTCTTGCAAGCAGTGGTATTGAGCATGACATCAAGATATGGACTCCAAAGGCCCTTGAGAAAGCTACTCTGCCCAAAATTATTGAGCAGGTATCATCCAAAGCTTTTCTGCCCCCTGGCTGTTCCTCAGTCTCAGTTGGTTCGAGAGCCAAAATGTCTGATGTTGTACTCAGAGGAACTAATTTCTCTGCTGGTACTTCTTTGAAGAAGGTTCACGTGTGTGATCGTGTTCATTGGTTTTCAATTGGTGGTGGTGGCTTTGACGAAGATTATCATATTATGTCTGATGTTGAATTTTCTGATGGGATGCCTGAGAGTGATGATGACGAAGAGGACAAAGAAGATGATGATGATGATGAGAATGTGAATGAGTATGATTGTGATTATGATTATGAATATGATTATTATGATGATGATGAAGAGGAGGAGGAGGAGAAGGAGGAAGAGGAGGAGAGCGAAGAGGGTGACAGTGATGATTGTGATGAAGATGATGGGTGA 1815 0.4309 MFCSIPLQPNLSIYFLFLLFKVSIIISHSSSFFNLCLHNPILFLIPQDRMNKRPITAVYKAIPDLCHRELGHLPPRNFALRLGASEDLVLRLDVLRKLHKHRGCVNTVSFNTDGDILVSGSDDWRVILWDWETGRIKLSFHSGHNNNVFQAKIMPHSEDRSIVTCAADGQVRHAKILENGGVETKFLAKHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRIGVPTELFTCQPIQDRWNYMPVIHLNAIAIDPRNPNLFAVAGTDEYTRLYDIRKYKWDGSTDFGQPTDFFCPPQLIGDERVGITGLAFSEQRELLVSYNDEFIYLFTQDMGLGPNPEPGFPKSMNCDAGEVGFSHGSVWSQSNMDGDEKITPQVFKGHRNCDTVKGVNFFGPNCEYVVSGSDCGRIFVWKKKSGQLIRVMEADKHVVNCIESHPHTMVLASSGIEHDIKIWTPKALEKATLPKIIEQVSSKAFLPPGCSSVSVGSRAKMSDVVLRGTNFSAGTSLKKVHVCDRVHWFSIGGGGFDEDYHIMSDVEFSDGMPESDDDEEDKEDDDDDENVNEYDCDYDYEYDYYDDDEEEEEEKEEEEESEEGDSDDCDEDDG 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03684 604 SMART WD40_4 133 175 IPR001680 GO:0005515
Vimu3g03684 604 SMART WD40_4 238 273 IPR001680 GO:0005515
Vimu3g03684 604 SMART WD40_4 415 454 IPR001680 GO:0005515
Vimu3g03684 604 SMART WD40_4 180 220 IPR001680 GO:0005515
Vimu3g03684 604 SMART WD40_4 91 130 IPR001680 GO:0005515
Vimu3g03684 604 SMART WD40_4 370 412 IPR001680 GO:0005515
Vimu3g03684 604 SMART WD40_4 290 329 IPR001680 GO:0005515
Vimu3g03684 604 Gene3D - 358 530 IPR015943 GO:0005515
Vimu3g03684 604 Gene3D - 89 333 IPR015943 GO:0005515
Vimu3g03684 604 MobiDBLite consensus disorder prediction 540 604 - -
Vimu3g03684 604 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 98 135 - -
Vimu3g03684 604 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 139 IPR001680 GO:0005515
Vimu3g03684 604 MobiDBLite consensus disorder prediction 537 604 - -
Vimu3g03684 604 SUPERFAMILY WD40 repeat-like 90 453 IPR036322 GO:0005515
Vimu3g03684 604 Pfam WD domain, G-beta repeat 95 130 IPR001680 GO:0005515
Vimu3g03684 604 Pfam WD domain, G-beta repeat 375 412 IPR001680 GO:0005515
Vimu3g03684 604 Coils Coil 575 595 - -
Vimu3g03684 604 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 63 592 IPR045151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03684 Vimu-Chr3 49405784 49411490 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03684 K11804 - gmx:100794236 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03684 3 49405784 49411490 Vimu3g03684 3 49405784 49411490 ECH