Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03676 ATGGGCAGCCCAAAGAAAGTGTCACCATCAAGAAGAAGCCCAAAGAGAAACTCAAGAACTCTCCATGATCTCTTTGTGCAGGAGAGTCCTCACTTCACCATTCCATCTTCTTCTCCCACTTCAGGAAATGAAGATCTTCTCTCCACTATTTCTTATTGCACCTTTGTTTTCACCTTCACCGACCCTTCAGAATCTCCGGCACAAAGAGACTCGAAGAGGCTTCAACTCACGAGACTCGTCTCGATATTGAAGTCTTCCAAGAAACCAGTGCATGGAAAAGTTTTGGTGGCTCTAGCGGCCATGATATCTGCCAACCTCTTCAGGCCACTCCCTCCACCTTCCAGCCCTTCTGCCATCACGGATTTGCCTGAAGAAGAATACCCAGTTTCTATATTTTCTCCTCTGTGGTCACATCTCCAAATAGTTTACGAGATACTTCTTAAGCTTGTTAACAGCACAGACCAGAAGATACTGAGAGAGTGCATCGATCATTCTTTCCTCCGCAACCTGTTAGCACTGTTCCAGTCAGAAGATCCGAGGGAACGTGAGACTTTGAAAAATGTGTACCACAAGATATATTCCAAGTTCATTTCTGATCGTTCCTTCATGAGGAAATCAATGACCGAGGTGCTCTTGAACTACGTTTTTGAGACAGAGAAGCATCCGGGTATTGCAGACTTGCTTGAGATATGGGGAACCATAATCAATGGGTTTACCGTGCCGCTCAAGGAAGAACACAAACTGTTCCTGATGAGAGTACTCATTCCTCTACACAAGACCAAGGGGATGCAAGTGTACCATAAGCAATTGGCTTATTGCGTGTCACAGTTTGTGCAGAAGGAGCCTATGCTTGGAGGGGTTGTTGTCAGAGGGATTTTGAGGTACTGGCCTGTCACAAACTGTCAAAAAGAAATTTTGCTAATTGGGGAGTTGGAAGATCTTGTTGAGAATTTAGACCCTGACCAGTATCGTAAGTTGGCCTTGCCCTTCTGTACCCAGATTACCAAATGCATAAACAGTTGGAATTCTCAGGTAGCGGAGCGTGCACTGTATATGTGGAACAATGAGCAGTTCGTGAAAATGGCACTGATAGGAACAGTGGAAGTGTTTAATGTGATTGTAGAAGGAATGGAAAAGAACCTGAAGTGGCATTGGAGCAAGAGCGTTAGACAACTAACGGAAAGTGTGAAGGTGATGCTGGAAGAAATGGATCCAGATCTGTATTCAAAGGGTCTCATTGACATGGAAGCTAAAGAATCAATGGCACATCTAGAAGATATCAAAAGAAAAAAGAAATGGGAAAGAATAGAATGGGAAGCTGCCAAGAATCAGTTTCTCAACCCACAACGTTATATACGTGTCTCCTACTGA 1371 0.4406 MGSPKKVSPSRRSPKRNSRTLHDLFVQESPHFTIPSSSPTSGNEDLLSTISYCTFVFTFTDPSESPAQRDSKRLQLTRLVSILKSSKKPVHGKVLVALAAMISANLFRPLPPPSSPSAITDLPEEEYPVSIFSPLWSHLQIVYEILLKLVNSTDQKILRECIDHSFLRNLLALFQSEDPRERETLKNVYHKIYSKFISDRSFMRKSMTEVLLNYVFETEKHPGIADLLEIWGTIINGFTVPLKEEHKLFLMRVLIPLHKTKGMQVYHKQLAYCVSQFVQKEPMLGGVVVRGILRYWPVTNCQKEILLIGELEDLVENLDPDQYRKLALPFCTQITKCINSWNSQVAERALYMWNNEQFVKMALIGTVEVFNVIVEGMEKNLKWHWSKSVRQLTESVKVMLEEMDPDLYSKGLIDMEAKESMAHLEDIKRKKKWERIEWEAAKNQFLNPQRYIRVSY 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03676 456 SUPERFAMILY ARM repeat 45 435 IPR016024 -
Vimu3g03676 456 Gene3D - 39 438 IPR011989 -
Vimu3g03676 456 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 25 444 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu3g03676 456 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 35 440 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu3g03676 456 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 39 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03676 Vimu-Chr3 49384373 49385962 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03676 K11584 - gmx:100802007 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03676 3 49384373 49385962 Vimu3g03676 3 49384373 49385962 ECH