Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03675 GTTTCTTTGCTGGCAGAACAAAAAGTTATTTGTATTGTTTTGCGGGTGTGCTCGAGAGCGAACCTTGAAGCTGTTGCGTTTCATTTAAAAGCGGTGTCTCGTTCTCTCTCTCACTTTCTCTTTGTTGCGCCTACAAATATTCCAAAAACCCCTCTCTCTCTGATTGAACTCAATTCGCGGGGGCGGATTCCGGTGGCGATGGCAGCGGCGGCGGCGACTCCATCGTGGCAGCCTCAGGAGCAAGGGTTCAAGGAGATCTGCGGCCTCCTCGAGCAGCAGATTTCGCATTCTTCTTCCGCCGATAAGGCTCAGATTTGGCAACACCTTCAGCGCTACTCGCACCTACCTGACTTCAACAATTACCTCGCCTTCATCTTCTCCCGTGCCGAGGTATTCCTTCGCCAATTTCCGCTTCACTTTTCTACTGCGATTGTCTCTGCTCCCTTGAAACGCTATTTTTCATGTGTGCTTTGCTTGCATCTATGTGCAAGAGTGAGGATCGCCTTGCGTGGTTTTGGATTGATTATGTCTGCGTTGTGCGGAGCTCTTGTCGGAAAATCAGTGGAAGTTCGTCAGGCTGCAGGGTTATACCTGAAGAATAACCTCAGAAATGCTTATAAATCTATGCAACCTGCCTACCAACAGTATGTGAAATCGGAGTTGCTGCCTTGTCTCGGTGCAGCAGATAAGCACATAAGGTCTACAACAGGAACTATTATTAGTGTTGTTGTTGAAATAGGAGGAGTTGTTGGATGGCCTGAATTGTTGCAAGCCCTCGTAAATTGCTTGGACAGCAACGATCTAAATCACATGGAAGGTGCAATGGATGCATTATCCAAGATTTGTGAAGATATTCCTCAATATCTTGATTCTGATGTACCGGGTTTAGCAGAACGCCCTATTAACATATTTCTTCCTAGATTATTTCGGTTTTTCCAATCTCCTCATGCTTCATTGAGAAAGCTATCACTTGGTTCTGTAAATCAATACATTATGTTAATGCCTTCTGCTCTATATGTATCCATGGATCAATATCTTCAAGGTCTGTTTATTCTCTCAAATGATCCTTCTGCTGAAGTGCGGAAGTTGGTTTGTGCGGCATTTGTTCAGCTAATTGAAGTCCGTCCATCTTTCTTGGAGCCACATTTAAGGAATGTGATTGAATACATGTTACAAGTCAACAAGGACACAGATGAAGAAGTAGCCCTCGAAGCCTGTGAATTTTGGTCTGCTTATTGTGATGCTCAACTGCCGCCTGAAAACTTAAGAGAATTCTTGCCTCGTCTTATTCCAGTATTGCTGTCAAACATGGCTTATGCAGATGATGATGAGTCACTTATTGAAGCTGAGGAAGATGGTTCTCAACCTGATCGGGATCAGGATCTTAAACCTCGATTTCATGCATCAAGATTTCATGGATCAGATGAAGCAGAAGATGACGATGACGATGTTGTCAACACATGGAATTTACGGAAATGCAGTGCAGCTGCTCTTGATATTCTTTCAAATGTGTTTGGAGACGAAATTCTTCCAACACTTATGCCTATTGTTGAGGCTAAGTTGTCTGCTGGTGGGGATGATGCTTGGAAAGAACGGGAAGCTGCTGTCCTGGCCCTTGGTGCCATAGGTGAAGGTTGCATCAATGGTCTTTATCCTCATTTGTTGGAGATCGTGGCCTTTCTTATCCCGCTTCTTGATGATAAGTTTCCTCTAATACGAAGTATTTCATGCTGGACACTGTCCCGTTTTAGCAAATTTATTGTTCAGGGTATTGGACATCCTAAAGGCTATGAACAATTTGATAATGTTCTTATGGGGCTTCTACGAAGAATTTTGGATGACAATAAGCGGGTACAAGAGGCTGCTTGTTCAGCTTTTGCAACTCTGGAAGAGGAAGCTGCTGAAGAGTTGGCACCGCGCTTGGAAATTATATTGAAGCACCTTATGACTGCATTTGGGAAATATCAACGGCGAAACCTAAGAATTGTATATGATGCAATTGGAACTCTAGCTGAAGCTGTTGGGGGAGAGCTGAATCAGCCTGGTTATCTTGAGATTCTAATGCCACCACTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCACTCCTGGAATGCTTTACCTCTATAGCACATGCTTTGGGTACTGGTTTCACTCAATTTGCGGAACCTGTATTTAGGAGATGCATAAATATAATCCAGACCCAACAATTTGCTAAGGCTGATTCTACTACAACTGGGGTTCAGTATGACAAGGAATTCATTGTATGCTCTCTTGATTTGCTTTCTGGACTAGCAGAGGGTCTTGGCAGTGGAATAGAGAGTTTGGTTGCACAATGTTCTCTGAGAGATCTACTTCTGCATTGTTGTGTGGATGATGCTTCTGATGTTCGACAAAGTGCCTTTGCCTTACTCGGAGACCTGGCACGAGTGTGCCCCGTTCATTTGCACCCTCGTTTGTCTGAGTTTCTTGAGGCTGCAGCCAAACAGCTGGAGATTTCTAAGGTAAAGGAGGCCATTTCAGTAGCAAATAATGCATGCTGGGCAATTGGAGAATTAGCAGTTAAGGTTCGTCAAGAAATTTCTCCTGTTGTCTTGACTGTAATTTCATCCCTGGTTCCCATTCTTCAGCACGTAGAGGGACTCAACAAGTCACTAATAGAGAATAGTGCAATAACACTGGGGAGGCTTGCATGGGTCTGTCCAGAGCTTGTATCACCACATATGGAGCATTTCATGCAATCCTGGTGCACTGCTTTGTCAATGATACGAGATGATGTTGAGAAAGAGGATGCTTTTAGAGGCCTATGTGCTATGGTCAAAGCTAATCCTTCTGGAGCTCTAAGCTCGCTTGTTTACATGTGCAAAGCGATTGCAAGTTGGCATGAAATAAGAAGTGAAGATTTACACAATGAAGTCTGCCAGGTCTTGCATGGGTATAAACAGATGCTTCGCAATGGAGCATGGGATCAGTGTATGTCTGCTTTGGAGCCTCCAGTAAAAGAAAAACTTTCAAAATATCAAGTATAA 3045 0.4368 VSLLAEQKVICIVLRVCSRANLEAVAFHLKAVSRSLSHFLFVAPTNIPKTPLSLIELNSRGRIPVAMAAAAATPSWQPQEQGFKEICGLLEQQISHSSSADKAQIWQHLQRYSHLPDFNNYLAFIFSRAEVFLRQFPLHFSTAIVSAPLKRYFSCVLCLHLCARVRIALRGFGLIMSALCGALVGKSVEVRQAAGLYLKNNLRNAYKSMQPAYQQYVKSELLPCLGAADKHIRSTTGTIISVVVEIGGVVGWPELLQALVNCLDSNDLNHMEGAMDALSKICEDIPQYLDSDVPGLAERPINIFLPRLFRFFQSPHASLRKLSLGSVNQYIMLMPSALYVSMDQYLQGLFILSNDPSAEVRKLVCAAFVQLIEVRPSFLEPHLRNVIEYMLQVNKDTDEEVALEACEFWSAYCDAQLPPENLREFLPRLIPVLLSNMAYADDDESLIEAEEDGSQPDRDQDLKPRFHASRFHGSDEAEDDDDDVVNTWNLRKCSAAALDILSNVFGDEILPTLMPIVEAKLSAGGDDAWKEREAAVLALGAIGEGCINGLYPHLLEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQGIGHPKGYEQFDNVLMGLLRRILDDNKRVQEAACSAFATLEEEAAEELAPRLEIILKHLMTAFGKYQRRNLRIVYDAIGTLAEAVGGELNQPGYLEILMPPLIEKWQQLSNSDKDLFPLLECFTSIAHALGTGFTQFAEPVFRRCINIIQTQQFAKADSTTTGVQYDKEFIVCSLDLLSGLAEGLGSGIESLVAQCSLRDLLLHCCVDDASDVRQSAFALLGDLARVCPVHLHPRLSEFLEAAAKQLEISKVKEAISVANNACWAIGELAVKVRQEISPVVLTVISSLVPILQHVEGLNKSLIENSAITLGRLAWVCPELVSPHMEHFMQSWCTALSMIRDDVEKEDAFRGLCAMVKANPSGALSSLVYMCKAIASWHEIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKEKLSKYQV 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03675 1014 Pfam Importin-beta N-terminal domain 186 226 IPR001494 GO:0006886|GO:0031267
Vimu3g03675 1014 FunFam Transportin-1 169 1014 - -
Vimu3g03675 1014 Pfam HEAT-like repeat 529 582 - -
Vimu3g03675 1014 SUPERFAMILY ARM repeat 76 1006 IPR016024 -
Vimu3g03675 1014 Gene3D - 73 137 IPR011989 -
Vimu3g03675 1014 Gene3D - 168 1014 IPR011989 -
Vimu3g03675 1014 PANTHER IMPORTIN BETA 85 990 IPR040122 GO:0006606
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03675 Vimu-Chr3 49366616 49382537 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03675 K18752 - gmx:100792702 1610.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03675 3 49366616 49382537 Vimu3g03675 3 49366616 49382537 ECH