Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03663 ATGGGGGTTCAACGACATGAAGCGCTTGCGGAAGATGAGCCTGCTGAAAATGCTTGTGCAAGTAGTGCTTTGAACCAAGGTGCTCTTCCCAGTGAGTCTGCCAATAGCAATCCATGTGTAAATACTGAAAGTAGTGCAGTTAATGAATCGGGTGGCATTTTTTTTAAGAAAAGTAATACATCACATATCTATAGACAAGATGTTGTGAAAAATATTACCAGTGGCATGATTGGGATTGTGACAGAAGTTGCTGGTGATTCAGATTCAGATTCAGATAGTAGCATTACTGATGACGAGAATGATAGTGAGGATGAGGATGGTGATGGTGAGGAAGGCGATGATAGTAATAATGCTAGCAGGAATTCTGAAAGTAATGTTTCCGCTGGGCATTGTAAAACCGATGCACTTCTGGCTGACCAGTTGCGTGTACTGTGGATGGACGAATCTGAATCCACTCAAAATTTCAATGACGTTGAAGTTGTTGATCGTGGATTTTTGCATGGTGATTTTGTTGCTGCGGCTTCAGACCCTACTGGGCAAGTGGGTGTGGTGGTTGATGTCAATATATGTGTGGATCTGTTGTCCCATGATGGCTCTATAATAAAAGATGTATCGTCAAAAAACATACAGCGGATTAGGGATTTCACTGTTGGTGATTATGTGGTGCTTGGGCCTTGGCTAGGCAGAGTCGATGATGTTTTGGATAATGTAACTGTCTTATTTGATGATGGTTCAGTTTGTAAAGTTTCGAAAGCAGATCCATTGAATCTTAAACCAATTTCTAAGAATATTGTTGAAGATGGGCATTTTCCCTATTACCCAGGGCAGCGGGTAAGGGCGAGCTCCTCATCAGTTTTCAAGAATTCAAGATGGCTGTCAGGCTTGTGGAAAGCTAATAGGTTAGAAGGTACAGTAACTAAAGTTACAGTTGGATCGGTGTTTGTTTATTGGATAGCATCGGCAGGTTATGGGCCATATTCTTCTACTGCCCCAGCCGAGGAGCAGAGTCCAAAAAACTTAAAATTGTTGTCTTGTTTTGCTCATGCAAATTGGCAATTGGGTGACTGGTGTCTCTTACCCTCATCAGTACTGTCATCCTCAGTTTCCATGGACAAAGGCTTCTCAAAATTGGAACTTAACGATTCTGCTAACAATGAATTAGATTCTAATCAGACAGGAAGTGGGTGTGATTCAGAAGAAGCTACTGTCGAGGAAACAAACGGGAATAAGGATACCATGGAGCTTGATCCAGCTGATACTTTGCAAGGGAATGATGGACATGAGAAAAGTAATCCTTCACGTGATTCTAGCTCATGCTGCAGTTCTATCTCCGTGTCAAAGGAACCTGTCCATGAAGCTTGGCCTCTTCACCGCAAGAAAATTAGGAAAGTTGTCATCAGGAAAGAAAAGAGGGCCCGAAAGAAAGAGGAAAGTTTTGAGAAAGCTCTTTTGATTGCCAACACAAGAACAAAAGTTGATGTTGCATGGCAGGATGGAACAATAGGGCATGAACTGAATTCTACAAGTTTAATTCCTATAGATAATCCTGGTGACCATGAATTTGTTTCAGAACAATATGTGGTAGAGAAGACCTCCGATGATGGTGATGATATTTCTGAAGCTAGGCGAGTTGGGGTGGTGAGAAGTGTTAATGCGAAGGAGCGGACAGCTTGTGTGAAGTGGTTAAAAAAGGTTGCTAGGGCAGAAGATCCTCGAGAGTTTGACAATGAAGAAGTTGTAAGTGTGTATGAGCTAGAGGGCCATCCAGATTATGATTACTGCTATGGGGATGTGGTTGTCCGCCTGACACCTGTGTCTGCACATTTAGAAACAGCTTCTGTTGAGGAGTCCACTGAGAAATCAGAACAGAAAACTGAAGACTGTGGAATTAAAAAGGAAGCAAAAATTCAAACTGATGCTAATAGAGTAGAAAATGCATCTAGTGATACTTCTATGCAATTTTCTGATCTCTCTTGGGTTGGAAATATAACTGGCCTTAAGAATGGTGATATTGAAGTTACTTGGGCTGATGGGATGGTGTCAACGGTTGGACCCCAAGCAATCTATGTGGTTGGTCGAGACGATGATGATGAATCACTTGCTGCAGGGAGTGAAGTAAGTGATGCTGCTAGCTGGGAAACTGTTAATGATGATGAAATGGAAGTCCTTGAGGATTCCAGAGAGGATATTCAGAGGGAAAATTCAAGCAGTGTTACGTCTGAGGCAGAAGAAAGTGGAGATAATGATTTTGGTAGGGCTGCCGCACTTTCTGTTCCCCTAGCAGCATTTCGGTTTGTCACTAGACTTGCCAGTGGAATATTCTCAAGGGGCCCAAGGAACTTGGATTCTATCGACATGCAGATAAAAGCTGGACATGAACATCCTTCACCAGTAGTTAATGACGAGTCTAGTTCGCAGAGACTTATTCCCATTAATGGTGATACTTCAGGCCGTAAGAATGGAAGATATGAGGAGGTTGTGTCGGAAGCAACTGAAACTGTGGAAGCATGTGACACCCTCTATGGCTTGAAAAAGGAAGAGGCTCTTGCAAGTTGTGATAATGGGAGTTGCAGTTTGAAACATTTTGACATAACTCAAGATCCATCAGACCACTATTTTATTGGTGCAAATGGACAGAGTAACAACAGGAAATGGTTAAAGAAAGTGCAACAAGATTGGAACATACTGCAGAATAACCTTCCTGAGGAAATCTATGTACGAGTTTATGAAGATAGAATGGATCTCTTGAGAGCAGTTATTGTAGGGCCATATGGAACCCCTTACCAAGATGGACTCTTTTTCTTTGATTTTCACCTTCCTCCAGAATACCCTGATGTTCCACCGTCTGCATACTATCATTCTGGTGGCTGGCGAATTAACCCTAATTTGTATGAGGAAGGGAAGGTTTGCCTTAGCCTTTTGAATACATGGACAGGCAGAGGAAATGAAGTTTGGGATCCAAAATCCTCTAGCATACTTCAAGTCCTGGTTTCACTTCAAGGTTTAGTACTCAACTCTAAGCCTTATTTCAATGAAGCTGGGTATGATAAGCAGATTGGGACAGCCGAAGGAGAGAAGAATTCATTGTCATACAATGAGAATACCTTTTTACTTAATTGCAAGACTATGATGTATCTTATGAGGAAACCCCCCAAGGATTTTGAAGTGCTTGTCAAAGAACATTTTAGGAGGAGGGGCCATAACATCCTTAAGGCTTGTGATGCATATATGAAAGGTTGCTTGATTGGCTCTTTGACTAGAGATGCCTCCGTTAGTGAAAAAAGCGGTCAGAATTCAACCTCTGTGGGTTTCAAGTTGATGTTAGCCAAGATAGTGCCAAAGCTTTTCTCGTCACTTAGTGAGGTTGGAGCTGATTGCGAGGAATTTAGGCATCTCAAAGATTTGTAG 3408 0.4205 MGVQRHEALAEDEPAENACASSALNQGALPSESANSNPCVNTESSAVNESGGIFFKKSNTSHIYRQDVVKNITSGMIGIVTEVAGDSDSDSDSSITDDENDSEDEDGDGEEGDDSNNASRNSESNVSAGHCKTDALLADQLRVLWMDESESTQNFNDVEVVDRGFLHGDFVAAASDPTGQVGVVVDVNICVDLLSHDGSIIKDVSSKNIQRIRDFTVGDYVVLGPWLGRVDDVLDNVTVLFDDGSVCKVSKADPLNLKPISKNIVEDGHFPYYPGQRVRASSSSVFKNSRWLSGLWKANRLEGTVTKVTVGSVFVYWIASAGYGPYSSTAPAEEQSPKNLKLLSCFAHANWQLGDWCLLPSSVLSSSVSMDKGFSKLELNDSANNELDSNQTGSGCDSEEATVEETNGNKDTMELDPADTLQGNDGHEKSNPSRDSSSCCSSISVSKEPVHEAWPLHRKKIRKVVIRKEKRARKKEESFEKALLIANTRTKVDVAWQDGTIGHELNSTSLIPIDNPGDHEFVSEQYVVEKTSDDGDDISEARRVGVVRSVNAKERTACVKWLKKVARAEDPREFDNEEVVSVYELEGHPDYDYCYGDVVVRLTPVSAHLETASVEESTEKSEQKTEDCGIKKEAKIQTDANRVENASSDTSMQFSDLSWVGNITGLKNGDIEVTWADGMVSTVGPQAIYVVGRDDDDESLAAGSEVSDAASWETVNDDEMEVLEDSREDIQRENSSSVTSEAEESGDNDFGRAAALSVPLAAFRFVTRLASGIFSRGPRNLDSIDMQIKAGHEHPSPVVNDESSSQRLIPINGDTSGRKNGRYEEVVSEATETVEACDTLYGLKKEEALASCDNGSCSLKHFDITQDPSDHYFIGANGQSNNRKWLKKVQQDWNILQNNLPEEIYVRVYEDRMDLLRAVIVGPYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQIGTAEGEKNSLSYNENTFLLNCKTMMYLMRKPPKDFEVLVKEHFRRRGHNILKACDAYMKGCLIGSLTRDASVSEKSGQNSTSVGFKLMLAKIVPKLFSSLSEVGADCEEFRHLKDL 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03663 1135 SMART ubc_7 887 1044 - -
Vimu3g03663 1135 MobiDBLite consensus disorder prediction 19 44 - -
Vimu3g03663 1135 MobiDBLite consensus disorder prediction 383 402 - -
Vimu3g03663 1135 CDD UBCc 887 1037 IPR000608 -
Vimu3g03663 1135 Gene3D Ubiquitin Conjugating Enzyme 852 1119 IPR016135 -
Vimu3g03663 1135 Pfam Ubiquitin-conjugating enzyme 889 1033 IPR000608 -
Vimu3g03663 1135 MobiDBLite consensus disorder prediction 724 747 - -
Vimu3g03663 1135 MobiDBLite consensus disorder prediction 793 816 - -
Vimu3g03663 1135 SUPERFAMILY UBC-like 865 1051 IPR016135 -
Vimu3g03663 1135 MobiDBLite consensus disorder prediction 1 44 - -
Vimu3g03663 1135 MobiDBLite consensus disorder prediction 82 127 - -
Vimu3g03663 1135 MobiDBLite consensus disorder prediction 91 112 - -
Vimu3g03663 1135 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 82 1126 - -
Vimu3g03663 1135 FunFam Probable ubiquitin-conjugating enzyme E2 23 850 1123 - -
Vimu3g03663 1135 MobiDBLite consensus disorder prediction 798 813 - -
Vimu3g03663 1135 MobiDBLite consensus disorder prediction 383 442 - -
Vimu3g03663 1135 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 884 1044 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03663 Vimu-Chr3 49244255 49251433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03663 162 362 Miscellaneous Gene Families AT2G33770 42.574 5.83e-50 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03663 K10581 - gmx:100809513 1885.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03663 3 49244255 49251433 Vimu3g03663 3 49244255 49251433 ECH