LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu3g03644	ATGGCCAAGCCAGTGTCCATTGAGGTATGGAATCCAAATGGCAAATACAGGGTCATCAGCACAAAATCAATGCCTGGAACACGTTGGATTAATCTTCTCATTCAGAATGATTGTCGCCTTGAAATATGTACTGAAAAGAAAACGATACTGTCAGTTGAAGACATCATTGCTTTGATTGGTGCTAAGTGCGATGGAGTTATAGGACAGTTGACCGAAGACTGGGGAGAAGAGTTGTTCTCTGCTTTGAGCAGAGCTGGAGGTAAAGCTTTCAGTAACATGGCTGTTGGTTATAACAATGTGAATGTTGATGCTGCAAACAAGTATGGTGTTGCTGTTGGAAACACTCCTGGTGTGCTCACTGAGACAACAGCAGAGTTGGCAGCTTCGCTGTCTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAATTCATGAGGGCAGGACTATATGATGGATGGCTTCCTCATTTATTTGTTGGAAACTTGCTCAAGGGACAAACTGTTGGTGTAATTGGAGCTGGTCGTATTGGATCTGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAACCTAATCTACTTTGATCTCTACCAGTCCACACGACTAGAAAAGTTTGTCACAGGCATGTTTCTACCAAGTCCTATCTCTTATGGTGCATTCTTGAAAGCAAGTGGTGAAACCCCAGTGACATGGAAAAGGGCATCATCCATGGATGAGGTCCTCCAGGAGGCGGATATAATTAGTCTCCATCCTGTGTTGGATAAAACCACTTATCATCTAGTCAACAAGGAAAGACTTGCTAAGATGAAGAAGGAAGCAATTCTTATAAATTGCAGTAGAGGGCCTGTTATTGATGAAGCTGCACTAGTGGAGCATTTAAAAGAGAATCCACTGTTTCGAGTAGGACTTGATGTGTTTGAGGACGAGCCCTACATGAAACCTGGTCTTGCAGATTTGAAGAATGCCATTGTGGTACCCCACATTGCATCTGCTTCCAAGTGGACCCGTGAGGGAATGGCAACACTAGCAGCTCTAAACGTTCTGGGTAAGATTAAAGGGTACCCAGTATGGTTTGATGCCAATAGGGTGGAACCATTCCTCAATGAGAATGCCCAGCCACCAGCTGCATGCCCAAGCATTGTCAATGCAAAAGCTCTGGGTTTGCCAAGTTCAAAGCTATAA	1185	0.4414	MAKPVSIEVWNPNGKYRVISTKSMPGTRWINLLIQNDCRLEICTEKKTILSVEDIIALIGAKCDGVIGQLTEDWGEELFSALSRAGGKAFSNMAVGYNNVNVDAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTGMFLPSPISYGAFLKASGETPVTWKRASSMDEVLQEADIISLHPVLDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEAALVEHLKENPLFRVGLDVFEDEPYMKPGLADLKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFLNENAQPPAACPSIVNAKALGLPSSKL	394

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu3g03644	394	PANTHER	2-HYDROXYACID DEHYDROGENASE-RELATED	38	357	-	-
	Vimu3g03644	394	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	120	331	IPR036291	-
	Vimu3g03644	394	Gene3D	-	19	354	-	-
	Vimu3g03644	394	SUPERFAMILY	Formate/glycerate dehydrogenase catalytic domain-like	37	156	-	-
	Vimu3g03644	394	Pfam	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	130	202	IPR006140	GO:0051287
	Vimu3g03644	394	Pfam	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	234	330	IPR006140	GO:0051287
	Vimu3g03644	394	Pfam	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	37	355	IPR006139	GO:0016616\|GO:0051287
	Vimu3g03644	394	CDD	GDH	16	354	-	-
	Vimu3g03644	394	ProSitePatterns	D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.	168	196	IPR029752	-
	Vimu3g03644	394	Gene3D	-	118	329	-	-
	Vimu3g03644	394	FunFam	Glycerate dehydrogenase HPR, peroxisomal	118	329	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu3g03644	K15893		-	gmx:547640	710.679

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu3g03644	3	49135996	49140744	Vimu3g03644	3	49135996	49140744	ECH