Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03627 ATGGCTGTGTATACGAGAGCTTCTGCACCAGCCATGTGGTGCGTTGTCATCTATCTCAATGACTATGAAGATGTGTTGCCTGCCAAAGCTTGCACCACTTATGAACATAGAACTGAGTATGACCGAGGAGTCAACACCTTCTCTCCTGAAGGCCGTTTGTTTCAGGTTGAATATGCAATTGAAGCCATCAAGCTGGGATCAACTGCAATTGGGTTGAAGACTAAAGAGGGTGTTGTCCTTGCTGTTGAAAAGCGCATAACTTCACCACTGCTGGAGCCAAGTAGTGTTGAGAAAATTATGGAAATTGATGAGCACATAGGTTGCGCAATGAGTGGATTGATTGCTGATGCTCGAACACTTGTTGAGCATGCACGGGTGGAAACTCAGAATCATAGGTTCTCCTATGGTGAGCCAATGACTGTTGAGTCTACAACCCAAGCTCTTTGTGATCTTGCCTTGCGTTTTGGTGAAGGTGATGAAGAATCCATGTCTCGACCATTTGGAGTATCTCTTCTCATTGCTGGCCATGATGAGAATGGTCCTAGCTTATATTACACCGATCCATCTGGCACATTTTGGCAATGCAACGGAAAAGCAATTGGTTCAGGGTCGGAAGTGCAATCTGGTGTTAATTATTATGTTGTGCAGGACCTAACTCTTCAGGAAGCCGAGACCATTGCTTTATCCATTTTGAAGCAAGTTATGGAAGAGAAGGTCACTCCCAACAATGTTGACATTGCCAAGGTGGCTCCAACATATCATCTTTACACCCCCTCCGAGGTGGAAGCTGTGATAAGTCGTCTATGA 807 0.4511 MAVYTRASAPAMWCVVIYLNDYEDVLPAKACTTYEHRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEVQSGVNYYVVQDLTLQEAETIALSILKQVMEEKVTPNNVDIAKVAPTYHLYTPSEVEAVISRL 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03627 268 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 39 265 IPR029055 -
Vimu3g03627 268 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 33 268 IPR029055 -
Vimu3g03627 268 CDD proteasome_alpha_type_5 40 249 IPR033812 GO:0019773|GO:0043161
Vimu3g03627 268 ProSiteProfiles Proteasome alpha-type subunit profile. 55 265 IPR023332 -
Vimu3g03627 268 SMART Proteasome_A_N_2 40 62 IPR000426 GO:0006511|GO:0019773
Vimu3g03627 268 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 45 265 - -
Vimu3g03627 268 FunFam Proteasome subunit alpha type 33 268 - -
Vimu3g03627 268 Pfam Proteasome subunit 63 249 IPR001353 GO:0005839|GO:0051603
Vimu3g03627 268 ProSitePatterns Proteasome alpha-type subunits signature. 40 62 IPR000426 GO:0006511|GO:0019773
Vimu3g03627 268 Pfam Proteasome subunit A N-terminal signature 40 62 IPR000426 GO:0006511|GO:0019773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03627 Vimu-Chr3 48984554 48990029 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03627 K02729 - gmx:547598 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03627 3 48984554 48990029 Vimu3g03627 3 48984554 48990029 ECH