Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03427 ATGCAAATCCTCTGCTACGCCATCTTTTCCATCTCTCTCCTTCTCTTTCACAACACAAACACCATCGTCCTAGTCCAAGCCCTCACTTCACCCTCAGACATTGCAGCCCTCAGAGCCTTCAAGGCCTCAATCAAACCATCCTCCATCGCACCCTGGTCTTGCCTTGCCTCATGGAACTTCACCACCGACCCCTGCTCACTCCCTCGCCGCACCAGCTTCATCTGCGGCCTCACCTGCACCCCTGATTCCAAAGCAATCAATCAAATCACTCTCGACCCATCAGGGTACTCCGGCACACTCACCCCTCAAATCTCTCGACTCACACAACTCACCACACTTGACCTCTCAGACAACAACTTCTTCGGCTCAATCCCCTCTTCAATCTCATCCCTCTCCAACCTCCAAACCTTAACCCTCCGATCCAATTTCTTCTCTGGCCCAATCCCTCCCTCCATAACCACCCTCAAATCACTCCAATCTCTCGACTTTTCACACAATTCTCTTTCTGGGTATCTACCAAACTCCATGAACTCCCTTGCCAAACTCCGTAGACTCGACCTCAGCTTCAACAGTCTGGCCGGTTCAATCCCTAAACTCCCACCCAACTTGCTCGAACTCGCGATCAAGGCCAATTCTCTATCTGGGCCTCTCCAAAAACAGAACTTTGAAGGGATGAACCAGTTAGAAGTGGTGGAGCTAAGCGATAACGCCCTCACCGGTACCCTGGAATCGTGGTTCTTCTCTCTACCGTCGCTGCAGCAGGTAAACTTGGCCAACAACACCTTCACGGCGGCGCAGATCTCAGGACCACACCCAGACAGTGGAGGAATCGGCAGCCGCAGCAACCTCGTCGCACTCGACCTTGGGTTTAACAGAATCCAAGGCTACGCGCCCGCGAATCTGGCCTCTTTTCCCGCACTGTCATTTCTGTCGCTTCGTTACAACGCGCTACGTGGTGCGATCCCTCTGGAGTACGGCCAAATCAAGTCCATAAGGAGACTCTTCCTCGATGGAAACTTCTTCCTCGGAAAGCCGCCACCCGGGCTTGTCGCCTCCACGGAGGTTACCGGAAGTCTGGGGGACAATTGTCTGCAGGAGTGTCCAAGGTCGTCGCAGCTGTGCTCGCCCGCACAGAAACCAATCTCAGTTTGCAAGCGAGCCTACAGTGGTAGACCAACACCAATACCTGTTGTCGGTTAA 1200 0.535 MQILCYAIFSISLLLFHNTNTIVLVQALTSPSDIAALRAFKASIKPSSIAPWSCLASWNFTTDPCSLPRRTSFICGLTCTPDSKAINQITLDPSGYSGTLTPQISRLTQLTTLDLSDNNFFGSIPSSISSLSNLQTLTLRSNFFSGPIPPSITTLKSLQSLDFSHNSLSGYLPNSMNSLAKLRRLDLSFNSLAGSIPKLPPNLLELAIKANSLSGPLQKQNFEGMNQLEVVELSDNALTGTLESWFFSLPSLQQVNLANNTFTAAQISGPHPDSGGIGSRSNLVALDLGFNRIQGYAPANLASFPALSFLSLRYNALRGAIPLEYGQIKSIRRLFLDGNFFLGKPPPGLVASTEVTGSLGDNCLQECPRSSQLCSPAQKPISVCKRAYSGRPTPIPVVG 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03427 399 Gene3D Ribonuclease Inhibitor 201 371 IPR032675 -
Vimu3g03427 399 PRINTS Leucine-rich repeat signature 179 192 - -
Vimu3g03427 399 PRINTS Leucine-rich repeat signature 158 171 - -
Vimu3g03427 399 Pfam Leucine rich repeat 132 192 IPR001611 GO:0005515
Vimu3g03427 399 Pfam Leucine rich repeat 201 260 IPR001611 GO:0005515
Vimu3g03427 399 FunFam Nuclear pore complex protein NUP107 30 198 - -
Vimu3g03427 399 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 15 386 - -
Vimu3g03427 399 Pfam Leucine rich repeat N-terminal domain 31 66 IPR013210 -
Vimu3g03427 399 Pfam Leucine Rich Repeat 109 131 IPR001611 GO:0005515
Vimu3g03427 399 Gene3D Ribonuclease Inhibitor 31 200 IPR032675 -
Vimu3g03427 399 SMART LRR_typ_2 155 178 IPR003591 -
Vimu3g03427 399 SMART LRR_typ_2 107 131 IPR003591 -
Vimu3g03427 399 SMART LRR_typ_2 249 272 IPR003591 -
Vimu3g03427 399 SMART LRR_typ_2 179 206 IPR003591 -
Vimu3g03427 399 SUPERFAMILY L domain-like 104 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03427 Vimu-Chr3 47354666 47356780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03427 36 388 Receptor kinase-like Gene Family AT3G05360 30.749 4.49e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03427 - - gmx:100801713 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03427 3 47354666 47356780 Vimu3g03427 3 47354666 47356780 ECH