Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03376 ATGACCATCGACATCAAGACCTTGGAAGACAGGTATGTTGATTCTTGCAGGAGACAGGGTGTTTTGGCTAATTCTTCTATTTTGTCAAGTCTTTTCAAGAATCTAAGCCTGACCATGATCGAACAGGCTGAGGTCAAAAAGTCCAATCATGAACTGTGCAAGCTGGAGATTTTAATTGATGACCTAAAGGATGTTGATATTGCTCCACTTCTTGACTTGTGCATGAACTTTGATGCTTCTGAAATAGAAGCTGTTGATGTACGTAATGAATCATCATGTGTATTAAATGGAGAACATGCATTGTCATTGATGCATGCTGTTAATAAAAAGCTTCGAGTAGTCCATCTACAGGATCTGTTACATGGGAAGGACTTCTTACGGGACATTTCACAAAGAGGTTTGACATGCCAAGTTTTGACATTGAGGTGCTCGTGTTTCCGGAAGCTGAACTTAACGGGGAAGTTCATGCATATGCATACCCTAAATCTTGATTTCAGTACTTCCCTTATGAGTTTCCAGGAGGAATGTTTCAATTGTATGCCCAATCTAATGCGCCTCTCAATGTGTGATACAAGGATTACAAATCTTTGGACAACTGTTGCAGCTCTCTCTAAGCTTCCTTCTTTAGTTGAATTAAGGTTTCAGTATTGGCAGTATTGCAATGATGCTGGGACATCTTTTACCTCATGCAGTGGGAAATCTGATGATACTGCTGATTTTAGCGTGCTTGATAGAATTCCTTTTATTGTTGAACCCTTCACCAATACAACTGAACTGACAGACCCCAACTTTAGTGCTGAAGATCCACTAAGGAATTTTTATTCCTTGGATGAAGAAGTTATAAATCATGATGTTCAAAGCATGGCTGAGGATTCGTCTGATGACAGTGAAGTTGACTTTACTAGTCGTCATCATAGATACTGGTTGTCTTTTCCTGGGTGGAGTTCTGAAGCGCCTCTTCTTTATGAGAATGAAGATGAAGCAGATTCATCTCAAGGCACTTTTATGGAACCTATTACTGATGTTTCTATGAAGTATATGTCTCGCCATGCATCACCAATATGTTATGAGAAGCATTACAGAGAGTTCATGATTGCTTCATTGCCAAATTTGAAAAATTTAGATAATATGCCTATCAGAAAGATTGACAAGGAAAGGGCTACTGGAATATTTTCTCAATACTTTGAATATCTTCCGTATAAATGGAAGCACAAAGAGAGTGTTGTAAGTATCTTACAGAAGAGAGAAATAAAATCAGGCCAGAATAAGGTGCACTCTTCCAAGAATAGGACGTCATATCCTTCTAGACAATCCCAATATTTTTATACTAGGTCTCTTTCTGCTGCTAAATTGGGATCCTCAACTTGGCCTTTCTTGCATCCCCTTTCTCTTTTAGGATGTGAACTGGACAAGGGCTTTCACCCAAGGCAGTTTGAGTATCATCCATCTGACTCCAGTTTGATGGTCTTTGGAACTTTAGATGGTGAAGTAGTTGTAATCAACCATGAGAACGAACATATTGTTAGTTATATTCCATCACTTGGAGCAATGAATAGTGTTTTGGGTCTCTGTTGGCTCAAAAAATATCCCTCTAAGCTTATAGCAGGATCAGACAATGGTTCCTTGAAATTGTATGACATCCACCACATACCAAGAAAAGTTACTGGCAGACATGGGAATTTTGATTGGGTTACGTTTGATGAATTTGACCAGTTGACATCTGTTCATGTTAACTCTACGGATGAACTATTTCTTGCAAGTGGGTACTCAAGAAATGTTGCTTTATATGACATCAACAGTGGGAAACGTTTACAAGTGTTCACAGATATGCATCGTGGACATATTAATGTAGTCAAGTTTGCTAATCATTCCCCATCGATTTTTGCCACTTCATCGTTTGATCATGATGTGAAGATGTGGGACTTGAGACAAAAACCAATTCACCCCTGCTTTACAGTTTCAAGCTCCAGAGGAAATGTGATGGTTTGCTTTTCTCCAGATGATCAATATATTCTTGCTTCAGCTGTTGATAATGAGGTTAGACAATATCTGGCTGTTGATGGTAGGCTTCACTTAGTTTTTGATATAGCTCCCACTGAAAGTTCTCAAAATTACACCCGTTCTTATTACATGAATGGGAGGGACTACATCATAAGTGGGAGTTGTGATGAGCACGTTCGTATTTGCTGTGCTCAAACAGGGAGGCGCCTAAGAGATATATCCCTTGAGGGAAGAAACTTAGGAAGTTCCGTGTTTGTTCAGTCTTTGAGGGGTGATCCTTTCCGGGATTTCAATTTGAGCGTGTTAGCAGCTTACATGCGACCAGGCTCCAAGTCTAAAATTGTCAAGATCAACTTACTAGCATCTAGTGGCCATGCCAACAAGGATGATTCTTATGATCTGCACCCTTGTCCATTTCACAGCATGGGAGCTTGA 2436 0.3966 MTIDIKTLEDRYVDSCRRQGVLANSSILSSLFKNLSLTMIEQAEVKKSNHELCKLEILIDDLKDVDIAPLLDLCMNFDASEIEAVDVRNESSCVLNGEHALSLMHAVNKKLRVVHLQDLLHGKDFLRDISQRGLTCQVLTLRCSCFRKLNLTGKFMHMHTLNLDFSTSLMSFQEECFNCMPNLMRLSMCDTRITNLWTTVAALSKLPSLVELRFQYWQYCNDAGTSFTSCSGKSDDTADFSVLDRIPFIVEPFTNTTELTDPNFSAEDPLRNFYSLDEEVINHDVQSMAEDSSDDSEVDFTSRHHRYWLSFPGWSSEAPLLYENEDEADSSQGTFMEPITDVSMKYMSRHASPICYEKHYREFMIASLPNLKNLDNMPIRKIDKERATGIFSQYFEYLPYKWKHKESVVSILQKREIKSGQNKVHSSKNRTSYPSRQSQYFYTRSLSAAKLGSSTWPFLHPLSLLGCELDKGFHPRQFEYHPSDSSLMVFGTLDGEVVVINHENEHIVSYIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIHHIPRKVTGRHGNFDWVTFDEFDQLTSVHVNSTDELFLASGYSRNVALYDINSGKRLQVFTDMHRGHINVVKFANHSPSIFATSSFDHDVKMWDLRQKPIHPCFTVSSSRGNVMVCFSPDDQYILASAVDNEVRQYLAVDGRLHLVFDIAPTESSQNYTRSYYMNGRDYIISGSCDEHVRICCAQTGRRLRDISLEGRNLGSSVFVQSLRGDPFRDFNLSVLAAYMRPGSKSKIVKINLLASSGHANKDDSYDLHPCPFHSMGA 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03376 811 SMART WD40_4 646 684 IPR001680 GO:0005515
Vimu3g03376 811 SMART WD40_4 562 597 IPR001680 GO:0005515
Vimu3g03376 811 SMART WD40_4 504 546 IPR001680 GO:0005515
Vimu3g03376 811 SMART WD40_4 600 641 IPR001680 GO:0005515
Vimu3g03376 811 SUPERFAMILY WD40 repeat-like 474 740 IPR036322 GO:0005515
Vimu3g03376 811 SUPERFAMILY L domain-like 136 230 - -
Vimu3g03376 811 SMART LRRcap_2 357 375 IPR003603 -
Vimu3g03376 811 Pfam WD domain, G-beta repeat 612 641 IPR001680 GO:0005515
Vimu3g03376 811 Gene3D Ribonuclease Inhibitor 109 390 IPR032675 -
Vimu3g03376 811 ProSiteProfiles Trp-Asp (WD) repeats profile. 608 643 IPR001680 GO:0005515
Vimu3g03376 811 Gene3D - 474 759 IPR015943 GO:0005515
Vimu3g03376 811 PANTHER BNAC09G30780D PROTEIN 2 811 IPR046377 GO:0071493|GO:0080008
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03376 - - gmx:100806443 1464.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03376 3 47058247 47065537 Vimu3g03376 3 47058247 47065537 ECH